Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PBOR_RS25215 Genome accession   NZ_CP009285
Coordinates   5921764..5923521 (+) Length   585 a.a.
NCBI ID   WP_042216438.1    Uniprot ID   -
Organism   Paenibacillus borealis strain DSM 13188     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5916764..5928521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBOR_RS25195 (PBOR_26200) - 5917703..5918374 (+) 672 WP_042216432.1 response regulator transcription factor -
  PBOR_RS25200 (PBOR_26205) - 5918371..5919441 (+) 1071 WP_218918860.1 HAMP domain-containing sensor histidine kinase -
  PBOR_RS25205 (PBOR_26210) - 5919516..5920580 (-) 1065 WP_042216434.1 suppressor of fused domain protein -
  PBOR_RS25210 (PBOR_26215) - 5920780..5921337 (+) 558 WP_042216436.1 SMI1/KNR4 family protein -
  PBOR_RS37480 - 5921434..5921589 (+) 156 WP_167549570.1 hypothetical protein -
  PBOR_RS25215 (PBOR_26225) rcrP 5921764..5923521 (+) 1758 WP_042216438.1 ABC transporter ATP-binding protein Regulator
  PBOR_RS25220 (PBOR_26230) rcrQ 5923521..5925281 (+) 1761 WP_042216440.1 ABC transporter ATP-binding protein Regulator
  PBOR_RS25225 (PBOR_26235) ppdK 5925395..5928079 (-) 2685 WP_174479833.1 pyruvate, phosphate dikinase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64325.70 Da        Isoelectric Point: 5.4196

>NTDB_id=128194 PBOR_RS25215 WP_042216438.1 5921764..5923521(+) (rcrP) [Paenibacillus borealis strain DSM 13188]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSEMSEILTAGAWMLLCALGSLATSIVVAGIAA
RIAADLSARLRANLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKITGKSWQWTLA
TGASVALLVLIVAVCITLVLPKFKKLQQLTDNLNRVSRENLNGLRVIRAYNAEKYQEEKFASANNELTSTNLFANNVMTT
LMPSISLIMSGLSLSIYWIGAVIIQAADGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILLPRAQVSAKRINEVLETV
PSLKNGSVTHFPVKREDELEFRGVSFKYPDAEDYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKEYDQQVLRNKMGYVSQKAVLFGGTVASNIAFGENGAGQVLSSDIVDAVYTSQSSEFVEKLEGNYEAHIAQGGSNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKDAHASTMLIVAQRIGTIKDADKIIVLEAGQIAGMGT
HDELMQTCSVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=128194 PBOR_RS25215 WP_042216438.1 5921764..5923521(+) (rcrP) [Paenibacillus borealis strain DSM 13188]
ATGTTGAAATTACTGAAGAATCTGGAACCCAAAGAATGGTTCTTATTCGGCATCAGCCTCATGTTCATTATCGCGCAGGT
CTGGCTGGACCTGGAGCTGCCTGACTACATGAGTGACATTACCCGGCTGATCCAGACCCCGGGCAGCGAAATGAGTGAGA
TCCTTACCGCCGGAGCCTGGATGCTGCTCTGTGCCCTGGGCAGTCTGGCGACTTCCATCGTCGTAGCAGGTATCGCTGCC
AGAATCGCAGCCGATCTGTCCGCCAGATTACGCGCTAATTTGTTCGACAAGGTACAGTCCTTCTCCATGGAGGAGATCAG
CAACTTCTCCACCGCCAGCCTGATTACCCGGTCCACGAATGATATTACGCAGGTGCAAATGCTGATTGTCATCGGCTTAC
AGCTGCTGGTCAAGGCTCCAATCCTTGCCGTATGGGCGATCCTCAAGATTACGGGTAAAAGCTGGCAGTGGACGCTGGCG
ACAGGTGCCTCTGTTGCTCTGCTGGTGCTGATTGTCGCCGTCTGCATCACTCTCGTTCTTCCTAAATTCAAGAAACTGCA
GCAGTTAACCGACAATCTGAACCGTGTCTCCAGAGAGAATCTGAACGGTCTGCGGGTCATCCGGGCTTACAATGCCGAGA
AATATCAGGAAGAGAAATTCGCTTCCGCCAACAACGAGCTAACCAGCACCAATTTGTTTGCCAACAATGTAATGACCACG
CTGATGCCGAGTATTTCCCTGATTATGAGCGGACTCAGCCTCTCGATCTATTGGATCGGTGCTGTAATTATTCAAGCGGC
CGACGGCACCGCCAAGATGGGCTTGTTCTCGGATATGATCGTCTTCTCATCGTACGCGATGCAGGTGGTTATGGCCTTCA
TGATGCTGATCATGATCTTCATTCTGCTGCCCCGCGCCCAGGTATCGGCCAAACGTATTAATGAAGTGCTGGAAACCGTG
CCTAGCCTGAAGAACGGATCTGTCACTCATTTCCCTGTGAAGCGAGAAGATGAGCTTGAATTCAGAGGGGTCAGCTTCAA
ATATCCTGACGCAGAGGATTATGTGCTGGAGAATATCAGCTTCACGGCGAAGCAGGGGGAGACGGTTGCTTTTATCGGCT
CAACAGGCTGCGGCAAGAGTACACTCGTTAATCTCATTCCCCGTTTCTATGATGCTACAGAAGGCGAAGTGCTCGTGAAC
GGCATCAATGTCAAAGAATACGACCAGCAGGTGCTGCGTAATAAAATGGGCTATGTCTCCCAGAAGGCGGTGCTGTTCGG
CGGAACGGTGGCTTCTAATATTGCTTTTGGCGAGAATGGTGCCGGTCAGGTGCTCAGCTCCGATATTGTCGATGCGGTGT
ACACCTCCCAATCCTCTGAATTTGTAGAGAAGCTGGAGGGCAACTATGAGGCCCACATCGCCCAAGGCGGCTCCAATCTG
TCCGGCGGACAGAAGCAGCGGCTCTCGATTGCCAGAGCGATTGCCCGGCGTCCGGAAATTCTGATCTTCGATGATTCATT
CTCGGCGCTTGACTATAAGACGGACCGCAAGCTGCGCAGCGAGCTGAAGAAGGACGCTCATGCGTCCACGATGCTGATCG
TTGCCCAGCGCATTGGTACGATTAAAGACGCCGACAAAATCATCGTGCTGGAAGCCGGACAAATCGCCGGTATGGGCACA
CATGATGAATTGATGCAAACCTGCAGCGTCTATCAGGAAATTGCTTACTCACAGCTGACCAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.174

100

0.521

Multiple sequence alignment