Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R70331_RS30095 Genome accession   NZ_CP009284
Coordinates   6915836..6916342 (-) Length   168 a.a.
NCBI ID   WP_042181912.1    Uniprot ID   A0A089MFZ3
Organism   Paenibacillus sp. FSL R7-0331     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6910836..6921342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R70331_RS30080 (R70331_31215) opp4A 6910958..6912676 (-) 1719 WP_042181907.1 oligopeptide ABC transporter substrate-binding protein -
  R70331_RS30085 (R70331_31220) - 6912957..6914915 (-) 1959 WP_042181910.1 DNA mismatch repair protein MutS -
  R70331_RS30090 (R70331_31225) rpsR 6915542..6915814 (-) 273 WP_019914552.1 30S ribosomal protein S18 -
  R70331_RS30095 (R70331_31230) ssbA 6915836..6916342 (-) 507 WP_042181912.1 single-stranded DNA-binding protein Machinery gene
  R70331_RS30100 (R70331_31235) rpsF 6916391..6916675 (-) 285 WP_025706808.1 30S ribosomal protein S6 -
  R70331_RS30105 (R70331_31240) - 6916895..6917092 (+) 198 WP_042181915.1 YjzC family protein -
  R70331_RS30115 (R70331_31250) - 6917715..6917939 (-) 225 WP_042181917.1 DUF951 domain-containing protein -
  R70331_RS30120 (R70331_31255) - 6917939..6918967 (-) 1029 WP_042181919.1 mechanosensitive ion channel family protein -
  R70331_RS30125 (R70331_31260) - 6918987..6919244 (-) 258 WP_042181921.1 DUF3343 domain-containing protein -
  R70331_RS30130 (R70331_31265) yyaC 6919438..6920046 (+) 609 WP_042181923.1 spore protease YyaC -
  R70331_RS30135 (R70331_31270) - 6920018..6920518 (-) 501 WP_042181925.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18451.27 Da        Isoelectric Point: 4.8280

>NTDB_id=128175 R70331_RS30095 WP_042181912.1 6915836..6916342(-) (ssbA) [Paenibacillus sp. FSL R7-0331]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGSMPEEPAFGGGNGGNSARGNNNNFSRSNNNQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=128175 R70331_RS30095 WP_042181912.1 6915836..6916342(-) (ssbA) [Paenibacillus sp. FSL R7-0331]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCTGCTGGTGTTGCCGTAAC
ACAGTTTACGCTTGCCGTAGACCGTAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTCATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTATTTGCGCAAAGGACGTCTGGCAGCCGTAGAAGGACGCATCCAAGTACGG
AATTACGAGAATAACGAAGGTAAACGTGTATACGTTACTGAAGTTATTGCTGATAATGTCCGATTCCTGGAATCCTCGCA
GAACCGTGAAGGCGGAAATGCACCGAGTGGCGGAAGTATGCCTGAAGAGCCAGCCTTTGGCGGCGGTAACGGCGGTAACA
GTGCACGCGGAAATAACAATAATTTCTCGCGCAGCAACAATAATCAAGATCCTTTTTCGGGCGATGGAAAACCGATCGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089MFZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.866

100

0.595
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.512

Multiple sequence alignment