Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R70331_RS27585 Genome accession   NZ_CP009284
Coordinates   6297263..6298630 (-) Length   455 a.a.
NCBI ID   WP_039877431.1    Uniprot ID   A0A089KMD2
Organism   Paenibacillus sp. FSL R7-0331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6292263..6303630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R70331_RS27555 (R70331_28605) ispF 6292287..6292775 (-) 489 WP_042181109.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  R70331_RS27560 (R70331_28610) ispD 6292779..6293471 (-) 693 WP_042181111.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  R70331_RS27565 (R70331_28615) - 6293566..6294654 (-) 1089 WP_042181113.1 PIN/TRAM domain-containing protein -
  R70331_RS27570 (R70331_28620) - 6294865..6295260 (+) 396 WP_039877428.1 hypothetical protein -
  R70331_RS27575 (R70331_28625) pssA 6295368..6296105 (-) 738 WP_042181115.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  R70331_RS27580 (R70331_28630) disA 6296170..6297246 (-) 1077 WP_042181117.1 DNA integrity scanning diadenylate cyclase DisA -
  R70331_RS27585 (R70331_28635) radA 6297263..6298630 (-) 1368 WP_039877431.1 DNA repair protein RadA Machinery gene
  R70331_RS27590 (R70331_28640) clpC 6298863..6301334 (-) 2472 WP_042181119.1 ATP-dependent protease ATP-binding subunit ClpC -
  R70331_RS27595 (R70331_28645) - 6301371..6302435 (-) 1065 WP_042181121.1 protein arginine kinase -
  R70331_RS27600 (R70331_28650) - 6302464..6302988 (-) 525 WP_042181123.1 UvrB/UvrC motif-containing protein -
  R70331_RS27605 (R70331_28655) - 6303016..6303477 (-) 462 WP_042181125.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49703.57 Da        Isoelectric Point: 6.6901

>NTDB_id=128170 R70331_RS27585 WP_039877431.1 6297263..6298630(-) (radA) [Paenibacillus sp. FSL R7-0331]
MAKAKTKFFCTDCGYESPKWFGKCPGCQAWNTMVEETESVVKTQGMNAPIFQSKEKAQSIINIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLTEVENPSELFLSERPLGVAGSAVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAETRVKEAAKLGFRRVIMPEKSMKGWKHPQDIQIIGVSTVADALKVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=128170 R70331_RS27585 WP_039877431.1 6297263..6298630(-) (radA) [Paenibacillus sp. FSL R7-0331]
ATGGCAAAAGCAAAAACGAAATTCTTCTGTACCGACTGCGGCTACGAATCGCCAAAATGGTTCGGCAAATGCCCGGGCTG
CCAGGCATGGAACACCATGGTGGAGGAAACAGAAAGCGTAGTCAAAACTCAAGGAATGAATGCACCTATTTTTCAGAGTA
AAGAAAAGGCGCAATCGATCATAAATATAGAAAGTGACAAAGAACCGCGCATCCTGACAGGTATCGGTGAACTGAACCGT
GTGCTTGGCGGAGGCATTGTACCCGGCTCTCTGGTACTTGTCGGCGGAGATCCCGGAATCGGAAAGTCGACCCTCCTGCT
GCAGACCTCGCACGCACTGACTACACAGGGACTCCGTGTGCTGTATATTTCGGGTGAGGAATCGGTACGCCAGACCAAGC
TCCGTGCTGACCGCCTCGGAGCGTTGTCAGCAGAGCTGTACGTATTGTGCGAAACCAATATGGAGAGCATTGAAGAGGCC
ATTGAGCAGATTCAGCCCCAGTTCCTGGTCATCGACTCCATTCAGACTGTATTTATGCCTGAAGTAACGAGTGCGCCCGG
CAGCGTGACACAGGTACGGGAGTGTACAACACGGTTTATGCGCATTGCCAAAATCCGCGGAATTGCGACAGTGCTGGTTG
GCCATGTTACCAAGGAGGGTGCCATTGCCGGCCCCCGGATGCTTGAGCATATGGTGGACTGTGTATTGTATTTTGAGGGG
GAACGGCATCATACCTACCGGCTGCTGCGAGCGGTAAAGAACCGCTTTGGCTCTACGAATGAGATTGGAATTTTTGAGAT
GGGTGAGATTGGCCTCACGGAAGTGGAGAATCCTTCAGAGCTGTTCCTGTCAGAGCGGCCGCTGGGAGTCGCCGGCTCTG
CTGTTGTGGCCAGCATGGAGGGAACCAGACCGGTGCTGGTTGAGCTTCAGGCACTGGTAGCTGCGACTCACTTCCCTTCC
CCCCGGCGGATGTGCACCGGGATGGACCATCAGCGGATGGCGCTTATTATTGCAGTTCTTGAGAAGCGGATGGGCATGTT
CCTGCAGAATCAGGATGCTTACCTCAACGTTGCCGGAGGTGTAAAGCTGGATGAGCCGGCTATTGACCTGGCGGTCGCGG
TCAGCATTGCCTCCAGCTTCCGTGATATATCTACCAAGCCCTACGATGTCTTCTTCGGCGAAGTCGGGCTCACAGGCGAG
GTAAGAGGTGTCTCGCGTGCCGAAACGCGGGTCAAGGAGGCAGCTAAGCTGGGCTTCCGGAGGGTAATAATGCCAGAGAA
GAGCATGAAGGGCTGGAAGCATCCGCAGGATATCCAGATTATTGGCGTCAGCACCGTAGCAGATGCACTAAAGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089KMD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.659
  radA Streptococcus pneumoniae Rx1

58.758

99.121

0.582
  radA Streptococcus pneumoniae D39

58.758

99.121

0.582
  radA Streptococcus pneumoniae R6

58.758

99.121

0.582
  radA Streptococcus pneumoniae TIGR4

58.758

99.121

0.582
  radA Streptococcus mitis NCTC 12261

58.758

99.121

0.582
  radA Streptococcus mitis SK321

58.758

99.121

0.582

Multiple sequence alignment