Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R70723_RS15615 Genome accession   NZ_CP009283
Coordinates   3625422..3627182 (-) Length   586 a.a.
NCBI ID   WP_039873271.1    Uniprot ID   A0A089KDS3
Organism   Paenibacillus sp. FSL R7-0273     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620422..3632182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R70723_RS15595 (R70723_16215) - 3620896..3621276 (+) 381 WP_231574892.1 hypothetical protein -
  R70723_RS15600 (R70723_16220) - 3621426..3622664 (+) 1239 WP_039873266.1 glycosyltransferase -
  R70723_RS15605 (R70723_16225) - 3622661..3623731 (+) 1071 WP_039873268.1 glycosyltransferase family 4 protein -
  R70723_RS15610 (R70723_16230) cls 3623921..3625363 (+) 1443 WP_039873269.1 cardiolipin synthase -
  R70723_RS15615 (R70723_16235) rcrQ 3625422..3627182 (-) 1761 WP_039873271.1 ABC transporter ATP-binding protein Regulator
  R70723_RS15620 (R70723_16240) rcrP 3627182..3628933 (-) 1752 WP_039873272.1 ABC transporter ATP-binding protein Regulator
  R70723_RS15625 (R70723_16245) - 3629080..3630141 (-) 1062 WP_231574893.1 HAMP domain-containing sensor histidine kinase -
  R70723_RS15630 (R70723_16250) - 3630138..3630812 (-) 675 WP_039873273.1 response regulator transcription factor -
  R70723_RS33420 - 3630956..3631123 (+) 168 WP_156123820.1 hypothetical protein -
  R70723_RS15635 (R70723_16260) - 3631212..3631862 (-) 651 WP_039873275.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64209.30 Da        Isoelectric Point: 6.3216

>NTDB_id=128126 R70723_RS15615 WP_039873271.1 3625422..3627182(-) (rcrQ) [Paenibacillus sp. FSL R7-0273]
MKKKPDQPSTWGRLLQYCRSHIPVILIAVISAAAGTILTLLGPDQLSELTDLITAGIVTGIDLDAVASIGFFLIFIYALS
AVLSLGQGLIMSMVTQKVSKSLRKDLSHKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTAIALFVGSMV
MMFKTNVLMTLTAIAATVIGFGLMAVIMKKSQKYFQSQQEFLGKINGHVEEVYTGHTVVKAYNGEAQMRGTFDSLNQSLK
QSAFKAQFLSGLMMPLMTFIGNLGYVAVCVVGAVLAINGSISFGVIVAFIMYVRFFTQPLAQMAQAAQNLQAASAASKRV
FEFLDAKEMDNEDHKDTRLTAADGHVVFEHVQFAYEETDKLVIKDFSAEVQPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDGTPVSSLTRENIHDLFCMVLQDTWMFEGTVRENLIYNKTGVTDAEMEEACRSVGLHHFIQTLSKGYDTVLNDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGNHHELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=128126 R70723_RS15615 WP_039873271.1 3625422..3627182(-) (rcrQ) [Paenibacillus sp. FSL R7-0273]
ATGAAAAAGAAACCAGACCAGCCGAGCACCTGGGGCCGGCTGCTCCAATATTGCCGTTCGCATATTCCTGTCATTCTGAT
CGCGGTTATCAGCGCTGCCGCGGGTACGATTCTTACCCTGCTCGGGCCGGATCAGCTCTCTGAGCTGACGGATCTGATCA
CTGCAGGTATCGTAACAGGCATCGATCTGGATGCTGTAGCATCAATCGGGTTTTTCCTGATTTTTATATACGCGCTCAGC
GCCGTTCTGTCCCTGGGACAAGGGCTTATCATGTCAATGGTTACCCAAAAGGTATCCAAGAGCCTGAGAAAAGACCTGTC
TCACAAAATGAACCGTCTGCCGATCTCCTATTATAACAAGTCTACGACCGGAGATATTCTGTCCCGGGTTACCAATGACG
TGGATACAATCGGTCAGGCGCTGAACCAGAGTGTCGGCACACTGGTTACTGCTATCGCCCTGTTCGTCGGCTCGATGGTC
ATGATGTTCAAAACGAATGTGCTTATGACCCTTACCGCGATTGCCGCTACTGTGATCGGCTTTGGCCTGATGGCGGTCAT
CATGAAGAAATCACAGAAATATTTCCAGAGCCAGCAGGAATTCCTCGGGAAAATCAACGGGCATGTCGAGGAGGTCTATA
CCGGCCATACTGTAGTAAAGGCCTACAACGGTGAGGCGCAGATGCGCGGAACCTTTGATTCCCTGAATCAGTCACTGAAG
CAGAGCGCCTTCAAAGCGCAGTTCCTTTCCGGCCTGATGATGCCGCTGATGACCTTTATCGGAAATCTCGGGTATGTGGC
TGTCTGTGTCGTCGGCGCTGTCCTGGCGATCAACGGCTCGATCTCCTTCGGTGTGATTGTCGCCTTCATTATGTATGTCC
GGTTCTTCACCCAGCCGCTGGCGCAAATGGCCCAGGCCGCACAGAATCTGCAGGCAGCCTCTGCTGCCAGCAAACGCGTA
TTTGAATTTCTGGATGCCAAGGAAATGGATAATGAGGATCACAAGGACACCAGACTCACCGCTGCTGACGGTCATGTAGT
GTTTGAGCATGTGCAGTTCGCTTATGAGGAAACGGATAAGCTGGTAATCAAGGACTTCTCCGCCGAGGTGCAGCCGGGCC
AGAAGATTGCCATAGTAGGACCGACCGGTGCCGGTAAAACCACGCTTATTAACCTGCTGATCCGCTTCAATGAGCTGAAG
GGCGGGGAAATCTACATCGACGGCACTCCGGTCAGCAGCTTGACCAGAGAGAACATTCACGATCTCTTCTGCATGGTGCT
GCAGGATACCTGGATGTTTGAAGGCACGGTAAGAGAAAATCTCATCTATAACAAAACAGGCGTGACCGATGCTGAAATGG
AAGAGGCCTGCCGCTCTGTCGGCCTGCATCATTTCATTCAGACATTGAGCAAGGGCTATGATACTGTATTGAATGACAAG
GTTAATCTCTCCGCAGGCCAGAAGCAGCAGCTGACGATCGCCCGGGCAATGCTTAAGGATGCCCCGATGCTTATTCTCGA
TGAGGCAACCAGCTCCGTGGATACGCGGACTGAGCTGCTGATCCAGCAGGCGATGGATCAGCTGATGGAAGGCAGAACCT
CATTCGTCATTGCCCACAGGCTCTCGACCATTAAGAATGCGGATGTCATTCTTGTACTGAAGGACGGCGATATCCTGGAG
AGCGGCAATCATCATGAGCTGCTTGCCAAGAACGGCTTCTATGCCGAGCTGTACAACAGCCAGTTTGAACAGGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(26-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089KDS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.017

98.635

0.543

Multiple sequence alignment