Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R50912_RS29830 Genome accession   NZ_CP009282
Coordinates   7014506..7015873 (-) Length   455 a.a.
NCBI ID   WP_042240020.1    Uniprot ID   A0A089K6H9
Organism   Paenibacillus sp. FSL R5-0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7009506..7020873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50912_RS29800 (R50912_30935) ispF 7009512..7010000 (-) 489 WP_042140144.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  R50912_RS29805 (R50912_30940) ispD 7009997..7010695 (-) 699 WP_042240015.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  R50912_RS29810 (R50912_30945) - 7010790..7011878 (-) 1089 WP_042240017.1 PIN/TRAM domain-containing protein -
  R50912_RS29815 (R50912_30950) - 7012091..7012486 (+) 396 WP_039298549.1 hypothetical protein -
  R50912_RS29820 (R50912_30955) pssA 7012610..7013350 (-) 741 WP_039298546.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  R50912_RS29825 (R50912_30960) disA 7013416..7014492 (-) 1077 WP_039298543.1 DNA integrity scanning diadenylate cyclase DisA -
  R50912_RS29830 (R50912_30965) radA 7014506..7015873 (-) 1368 WP_042240020.1 DNA repair protein RadA Machinery gene
  R50912_RS29835 (R50912_30970) clpC 7016096..7018573 (-) 2478 WP_042240021.1 ATP-dependent protease ATP-binding subunit ClpC -
  R50912_RS29840 (R50912_30975) - 7018610..7019674 (-) 1065 WP_039298534.1 protein arginine kinase -
  R50912_RS29845 (R50912_30980) - 7019704..7020228 (-) 525 WP_039298531.1 UvrB/UvrC motif-containing protein -
  R50912_RS29850 (R50912_30985) - 7020259..7020720 (-) 462 WP_039298529.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49754.71 Da        Isoelectric Point: 6.5040

>NTDB_id=128102 R50912_RS29830 WP_042240020.1 7014506..7015873(-) (radA) [Paenibacillus sp. FSL R5-0912]
MAKPKTKFFCTECGYESPKWFGKCPGCQEWNSMVEETESVVKTQGMNAPIFQSKEKAQSIINIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTIQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIKPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEVGLTEVENPSELFLSERPLGVAGSAVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAVAVSIASSFRDIPTKPYDVFFGEVGLTGE
VRGVSRAEMRVKEAAKLGFRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=128102 R50912_RS29830 WP_042240020.1 7014506..7015873(-) (radA) [Paenibacillus sp. FSL R5-0912]
ATGGCCAAACCAAAAACAAAATTTTTCTGCACCGAATGTGGTTACGAATCACCGAAATGGTTCGGGAAATGCCCGGGCTG
CCAGGAATGGAACTCCATGGTGGAAGAAACGGAAAGCGTAGTCAAAACCCAAGGCATGAATGCACCTATTTTTCAGAGTA
AAGAAAAGGCGCAATCGATCATAAATATAGAAAGTGACAAAGAGCCGCGTATCCTTACAGGCATCGGAGAGCTTAACCGT
GTGCTTGGCGGCGGTATCGTTCCCGGCTCGCTAGTACTGGTCGGTGGTGACCCCGGAATCGGGAAGTCCACACTGCTGCT
GCAGACATCGCACGCCCTTACAATACAGGGGCTCCGCGTTCTGTATATCTCCGGGGAAGAATCGGTGCGCCAGACTAAGC
TTCGGGCTGACCGCCTCGGGGCGTTGTCGGCGGAACTGTACGTTCTCTGTGAGACGAACATGGAGAGCATTGAAGAAGCA
ATCGAGCAGATTAAGCCGCAGTTTCTGGTCATCGACTCGATCCAGACCGTATTTATGCCTGAAGTGACCAGTGCGCCAGG
CAGTGTAACACAGGTGCGGGAATGTACGACAAGATTTATGCGGATTGCCAAGATCCGTGGAATTGCAACGGTACTTGTAG
GACATGTAACGAAAGAAGGCGCAATTGCCGGTCCACGGATGCTGGAGCATATGGTGGACTGTGTGCTCTATTTCGAAGGA
GAACGTCATCATACGTACCGGTTGCTACGGGCGGTGAAGAACCGCTTTGGCTCAACCAATGAAATCGGTATTTTCGAGAT
GGGTGAGGTTGGCCTTACCGAGGTGGAGAACCCTTCCGAGCTGTTCCTTTCTGAACGGCCGCTCGGAGTGGCTGGTTCCG
CGGTTGTAGCCAGCATGGAAGGCACAAGACCGGTGCTTGTCGAATTACAGGCGCTGGTTGCAGCAACCCATTTCCCTTCG
CCCCGCAGAATGTGCACAGGTATGGATCATCAGAGAATGGCGCTGATCATTGCTGTCCTGGAGAAACGGATGGGCATGTT
CCTGCAGAATCAGGATGCTTACCTCAATGTTGCCGGAGGTGTTAAGCTGGATGAGCCGGCGGTGGATCTGGCAGTCGCCG
TCAGTATTGCTTCCAGCTTCCGGGATATTCCGACCAAGCCGTATGATGTGTTTTTTGGGGAGGTAGGACTTACCGGCGAG
GTGAGAGGGGTGTCACGCGCAGAGATGCGGGTGAAGGAGGCCGCTAAGCTCGGCTTCCGGCGGGTAATTATGCCTGAGAA
AAGCATGAAAGGCTGGAAGCATCCGCAGGATATCCAGATTATAGGCGTCAGCACCGTAGCAGATGCACTAGCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

AAA domain (AAA_25)

(76-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089K6H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.655
  radA Streptococcus pneumoniae Rx1

58.667

98.901

0.58
  radA Streptococcus pneumoniae D39

58.667

98.901

0.58
  radA Streptococcus pneumoniae R6

58.667

98.901

0.58
  radA Streptococcus pneumoniae TIGR4

58.667

98.901

0.58
  radA Streptococcus mitis NCTC 12261

58.667

98.901

0.58
  radA Streptococcus mitis SK321

58.667

98.901

0.58

Multiple sequence alignment