Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R50912_RS18860 Genome accession   NZ_CP009282
Coordinates   4480560..4481624 (-) Length   354 a.a.
NCBI ID   WP_042138075.1    Uniprot ID   A0A089LB11
Organism   Paenibacillus sp. FSL R5-0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4475560..4486624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50912_RS18840 (R50912_19605) - 4476517..4476777 (-) 261 WP_019910496.1 stage V sporulation protein S -
  R50912_RS18845 (R50912_19610) - 4476980..4477774 (-) 795 WP_039294761.1 TIGR00282 family metallophosphoesterase -
  R50912_RS18850 (R50912_19615) rny 4477841..4479382 (-) 1542 WP_042237068.1 ribonuclease Y -
  R50912_RS18855 (R50912_19620) - 4479691..4480425 (-) 735 WP_042237070.1 RecX family transcriptional regulator -
  R50912_RS18860 (R50912_19625) recA 4480560..4481624 (-) 1065 WP_042138075.1 recombinase RecA Machinery gene
  R50912_RS18865 (R50912_19630) - 4481909..4483198 (-) 1290 WP_042237073.1 competence/damage-inducible protein A -
  R50912_RS18870 (R50912_19635) pgsA 4483258..4483845 (-) 588 WP_039294770.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R50912_RS18875 (R50912_19640) - 4483996..4484487 (-) 492 WP_042138080.1 YajQ family cyclic di-GMP-binding protein -
  R50912_RS35635 - 4484722..4484883 (-) 162 WP_167347618.1 hypothetical protein -
  R50912_RS18880 (R50912_19650) - 4484967..4485917 (-) 951 WP_042237074.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38198.71 Da        Isoelectric Point: 4.9127

>NTDB_id=128089 R50912_RS18860 WP_042138075.1 4480560..4481624(-) (recA) [Paenibacillus sp. FSL R5-0912]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMKVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQKLGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRT
KIKVVKNKVAPPFKQADVDIMYGEGISREGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFLKEHQDIALLIENK
IREASNLSTLVAAPTEADVVAEQEEEEKLLLEIE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=128089 R50912_RS18860 WP_042138075.1 4480560..4481624(-) (recA) [Paenibacillus sp. FSL R5-0912]
TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGATCATGAAACT
GGGAGAATCCACTCACATGAAAGTGGAAGTAGTACCTAGCGGATCTTTGGCACTTGATATTGCACTAGGTATTGGCGGAC
TTCCCAAAGGACGCATTATTGAAGTATACGGACCGGAATCATCCGGTAAGACGACCGTTGCACTTCATGCTATCGCAGAA
GTACAAAAGCTTGGCGGACAAGCTGCTTTCATCGATGCGGAGCATGCCCTTGACCCTAAGTATGCGAATGCGCTTGGCGT
TAACATTGATGAATTGCTGCTATCCCAGCCGGATACGGGCGAACAGGCACTGGAAATTGCTGAAGCACTCGTTCGCAGTG
GGGCTGTAGACATCATCGTTGTGGACTCCGTTGCCGCATTGGTACCGAAGGCCGAAATCGAAGGCGACATGGGAGATTCC
CATGTAGGTTTGCAGGCACGTCTGATGTCCCAGGCCTTGCGTAAGCTTTCGGGTGCCATTAACAAATCCAACACGATTGC
CATCTTCATTAACCAGCTTCGTGAGAAGATCGGAGTTATGTTCGGTAACCCTGAGACCACTCCGGGTGGACGCGCTCTGA
AATTCTACTCCTCCGTTCGTCTCGACGTACGCCGGGTAGAGAGCATTAAGATGGGGAACGATGTTGTGGGTAACCGCACC
AAGATCAAAGTCGTGAAGAACAAGGTGGCGCCTCCGTTTAAGCAAGCGGATGTGGATATCATGTACGGCGAAGGGATTTC
CAGAGAGGGAAGCCTTGTGGATATCGGTACTGAGATGGATATCGTTAACAAGAGCGGTGCCTGGTATTCTTATGAAGGTG
AGCGTCTTGGCCAAGGTCGTGAGAACTCCAAGCAGTTCCTGAAAGAACATCAGGATATTGCCCTGTTGATCGAGAATAAG
ATCCGCGAAGCAAGTAACTTATCTACTCTGGTAGCTGCACCAACAGAAGCTGATGTGGTTGCAGAACAAGAGGAAGAAGA
GAAATTGCTGCTTGAGATTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089LB11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.373

0.777
  recA Latilactobacillus sakei subsp. sakei 23K

70.115

98.305

0.689
  recA Streptococcus pneumoniae TIGR4

67.521

99.153

0.669
  recA Streptococcus pneumoniae Rx1

67.521

99.153

0.669
  recA Streptococcus pneumoniae D39

67.521

99.153

0.669
  recA Streptococcus pneumoniae R6

67.521

99.153

0.669
  recA Streptococcus pyogenes NZ131

71.296

91.525

0.653
  recA Streptococcus mitis NCTC 12261

70.462

91.808

0.647
  recA Streptococcus mutans UA159

70.679

91.525

0.647
  recA Streptococcus mitis SK321

70.154

91.808

0.644
  recA Lactococcus lactis subsp. cremoris KW2

69.091

93.22

0.644
  recA Acinetobacter baumannii D1279779

64

98.87

0.633
  recA Ralstonia pseudosolanacearum GMI1000

66.667

94.068

0.627
  recA Glaesserella parasuis strain SC1401

62.571

98.87

0.619
  recA Acinetobacter baylyi ADP1

61.756

99.718

0.616
  recA Neisseria gonorrhoeae MS11

64.671

94.35

0.61
  recA Neisseria gonorrhoeae MS11

64.671

94.35

0.61
  recA Neisseria gonorrhoeae strain FA1090

64.671

94.35

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

90.678

0.605
  recA Vibrio cholerae strain A1552

66.667

90.678

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.157

93.785

0.602
  recA Pseudomonas stutzeri DSM 10701

62.353

96.045

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.373

0.588
  recA Helicobacter pylori 26695

63.158

91.243

0.576
  recA Helicobacter pylori strain NCTC11637

62.848

91.243

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.243

0.568

Multiple sequence alignment