Detailed information NTG0128089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AA102_RS05540
• Genome accession: NZ_CP011416
• Coordinates: 1056674..1057666 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFSAN029787
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1051674..1062666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA102_RS05515 (AA102_05510)	ygbN	1052329..1053693 (+)	1365	WP_000104439.1	GntP family transporter	-
AA102_RS05520 (AA102_05515)	-	1053732..1053968 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AA102_RS05525 (AA102_05520)	-	1053979..1055406 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AA102_RS05530 (AA102_05525)	-	1055406..1055999 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AA102_RS05535 (AA102_05530)	-	1056146..1056553 (+)	408	WP_001208072.1	MarR family transcriptional regulator	-
AA102_RS05540 (AA102_05535)	rpoS	1056674..1057666 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AA102_RS05545 (AA102_05540)	nlpD	1057729..1058823 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AA102_RS05550 (AA102_05545)	pcm	1059008..1059634 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AA102_RS05555 (AA102_05550)	surE	1059628..1060389 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AA102_RS05560 (AA102_05555)	truD	1060370..1061419 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AA102_RS05565 (AA102_05560)	ispF	1061416..1061895 (-)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AA102_RS05570 (AA102_05565)	ispD	1061895..1062605 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=128089 AA102_RS05540 WP_000081550.1 1056674..1057666(-) (rpoS) [Escherichia coli strain CFSAN029787]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=128089 AA102_RS05540 WP_000081550.1 1056674..1057666(-) (rpoS) [Escherichia coli strain CFSAN029787]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715