Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AA102_RS05230 Genome accession   NZ_CP011416
Coordinates   1000070..1000585 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain CFSAN029787     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 995070..1005585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA102_RS05205 (AA102_05200) ygaZ 995469..996206 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AA102_RS05210 (AA102_05205) ygaH 996196..996531 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AA102_RS05215 (AA102_05210) emrR 996622..997152 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AA102_RS05220 (AA102_05215) emrA 997279..998451 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AA102_RS05225 (AA102_05220) emrB 998468..1000006 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AA102_RS05230 (AA102_05225) luxS 1000070..1000585 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  AA102_RS05235 (AA102_05230) gshA 1000735..1002291 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AA102_RS05240 (AA102_05235) yqaA 1002364..1002792 (-) 429 WP_001287457.1 YqaA family protein -
  AA102_RS05245 (AA102_05240) yqaB 1002789..1003355 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AA102_RS05270 (AA102_05265) csrA 1004673..1004858 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=128086 AA102_RS05230 WP_001130210.1 1000070..1000585(-) (luxS) [Escherichia coli strain CFSAN029787]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=128086 AA102_RS05230 WP_001130210.1 1000070..1000585(-) (luxS) [Escherichia coli strain CFSAN029787]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737