Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R50345_RS25475 Genome accession   NZ_CP009281
Coordinates   5802284..5804041 (+) Length   585 a.a.
NCBI ID   WP_042130981.1    Uniprot ID   A0A1R0XNY9
Organism   Paenibacillus sp. FSL R5-0345     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5797284..5809041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50345_RS25445 (R50345_26175) - 5797361..5797936 (+) 576 WP_042130976.1 methyltransferase domain-containing protein -
  R50345_RS25450 (R50345_26180) - 5797956..5798636 (+) 681 WP_042130977.1 response regulator transcription factor -
  R50345_RS25455 (R50345_26185) - 5798629..5799723 (+) 1095 WP_042130978.1 HAMP domain-containing sensor histidine kinase -
  R50345_RS25460 (R50345_26190) - 5799886..5800557 (+) 672 WP_042130979.1 response regulator transcription factor -
  R50345_RS25465 - 5800554..5801633 (+) 1080 WP_042130980.1 HAMP domain-containing sensor histidine kinase -
  R50345_RS25470 - 5801630..5802223 (+) 594 WP_081954191.1 GNAT family N-acetyltransferase -
  R50345_RS25475 (R50345_26205) rcrP 5802284..5804041 (+) 1758 WP_042130981.1 ABC transporter ATP-binding protein Regulator
  R50345_RS25480 (R50345_26210) rcrQ 5804041..5805801 (+) 1761 WP_042130982.1 ABC transporter ATP-binding protein Regulator
  R50345_RS25485 (R50345_26215) - 5805874..5806662 (-) 789 WP_042130983.1 RNA methyltransferase -
  R50345_RS25490 (R50345_26220) - 5806996..5807679 (-) 684 WP_331281342.1 TrkA family potassium uptake protein -
  R50345_RS25495 (R50345_26225) - 5807843..5808079 (+) 237 WP_042130985.1 small acid-soluble spore protein SspI -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64452.97 Da        Isoelectric Point: 5.4252

>NTDB_id=128065 R50345_RS25475 WP_042130981.1 5802284..5804041(+) (rcrP) [Paenibacillus sp. FSL R5-0345]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSEMNEIIVAGGWMLICALGSLATSVVVAGIAA
RIAADLSARLRSNLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWALLKISGKSWQWTLS
TGVAVALLVIIVAICIVLVLPKFKKLQLLTDNLNRVSRENLNGLRVIRAYNAEQYQEKKFAVANNELTSTNLFANNVMTM
LMPSITLIMSGLSLSIYWIGAVLIQAAEGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILLPRAQVSAKRINEVLETV
PSLKNGSVTQFPVKREDEIEFRGVSFKYPDAEEYVLENISFTAKQGETIAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKEYDQQALRNKMGYVSQKAVLFGGTVSSNIAFGENGSGQVLSSDIVDAVYTSQSSEFVEKLEGNYDAHIAQGGSNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKDAHDSTMLIVAQRIGTIKDADKIIVLEAGQIAGIGT
HDQLMQTCSVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=128065 R50345_RS25475 WP_042130981.1 5802284..5804041(+) (rcrP) [Paenibacillus sp. FSL R5-0345]
ATGTTGAAATTACTCAAGAATCTGGAACCCAAAGAATGGTTCTTATTCGGCATCAGCCTCATGTTCATTATCGCTCAAGT
TTGGCTGGATTTAGAACTGCCTGACTACATGAGTGATATTACCCGGCTGATCCAGACACCAGGAAGCGAAATGAATGAGA
TCATTGTGGCAGGAGGCTGGATGCTGATCTGTGCTCTTGGCAGTCTGGCGACCTCGGTGGTTGTAGCAGGCATTGCTGCG
AGAATAGCGGCCGACTTGTCTGCAAGATTGCGTTCCAATTTGTTTGATAAGGTGCAGTCCTTCTCCATGGAGGAAATCAG
CAACTTCTCAACAGCAAGTCTAATTACCCGTTCCACGAATGACATCACGCAAGTACAAATGCTGATTGTGATCGGCTTAC
AACTGCTTGTGAAAGCTCCAATCCTTGCAGTGTGGGCGTTACTCAAGATTTCCGGCAAAAGCTGGCAGTGGACCCTTTCT
ACAGGTGTCGCGGTCGCACTCCTCGTAATTATTGTCGCGATCTGTATCGTGCTTGTCCTGCCTAAATTTAAAAAGCTGCA
GTTGCTTACAGATAATCTGAATCGTGTGTCCAGAGAGAATCTTAACGGTCTTCGTGTCATCCGGGCTTACAATGCCGAAC
AATATCAGGAAAAGAAGTTCGCTGTAGCCAACAACGAGCTTACCAGTACCAATCTATTTGCCAACAATGTTATGACCATG
TTGATGCCAAGTATTACTTTGATTATGAGTGGGTTAAGCCTCTCCATCTATTGGATCGGTGCCGTGCTCATTCAAGCAGC
CGAGGGGACAGCCAAGATGGGCTTGTTCTCAGATATGATCGTATTCTCATCTTATGCCATGCAAGTAGTTATGGCCTTTA
TGATGTTGATTATGATCTTTATCTTACTGCCCCGCGCTCAAGTGTCGGCTAAGCGTATCAATGAAGTACTAGAAACAGTA
CCTAGCTTGAAGAATGGATCAGTAACTCAATTCCCTGTGAAGCGAGAAGATGAAATTGAATTCAGGGGGGTTAGCTTCAA
ATATCCAGATGCAGAGGAATATGTGTTGGAGAACATCAGCTTCACGGCAAAACAGGGAGAAACGATTGCTTTTATCGGAT
CAACAGGCTGCGGAAAAAGTACACTTGTTAATCTCATTCCCCGTTTCTATGATGCTACAGAAGGTGAAGTGCTGGTAAAT
GGCATCAATGTTAAAGAATACGACCAGCAAGCGCTACGGAATAAAATGGGCTACGTCTCCCAGAAGGCTGTTTTGTTTGG
AGGAACAGTGTCCTCCAATATTGCATTTGGTGAGAACGGCTCCGGTCAGGTCCTCAGTTCAGATATTGTAGATGCGGTGT
ACACTTCCCAATCCTCTGAATTTGTAGAAAAGCTAGAGGGGAACTATGATGCCCATATCGCCCAAGGCGGATCAAATCTC
TCTGGCGGGCAGAAACAACGGCTGTCGATTGCCAGGGCGATTGCACGACGTCCAGAAATATTAATCTTTGACGATTCTTT
CTCGGCGCTTGACTATAAGACTGACCGCAAATTACGCAGTGAGCTAAAAAAAGACGCGCATGACTCAACAATGCTGATCG
TAGCTCAGCGTATCGGTACAATCAAAGACGCCGATAAAATCATTGTTCTGGAAGCCGGACAAATCGCCGGTATCGGAACA
CATGACCAATTAATGCAAACCTGCAGCGTATATCAGGAAATTGCCTACTCACAGCTGACCAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0XNY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.846

100

0.528

Multiple sequence alignment