Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P40081_RS32930 Genome accession   NZ_CP009280
Coordinates   7707470..7708837 (-) Length   455 a.a.
NCBI ID   WP_039298540.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL P4-0081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7702470..7713837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P40081_RS32900 (P40081_34300) ispF 7702478..7702966 (-) 489 WP_042140144.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  P40081_RS32905 (P40081_34305) ispD 7702963..7703661 (-) 699 WP_039298554.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  P40081_RS32910 (P40081_34310) - 7703756..7704844 (-) 1089 WP_042140145.1 PIN/TRAM domain-containing protein -
  P40081_RS32915 (P40081_34315) - 7705056..7705451 (+) 396 WP_039298549.1 hypothetical protein -
  P40081_RS32920 (P40081_34320) pssA 7705574..7706314 (-) 741 WP_039298546.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  P40081_RS32925 (P40081_34325) disA 7706380..7707456 (-) 1077 WP_039298543.1 DNA integrity scanning diadenylate cyclase DisA -
  P40081_RS32930 (P40081_34330) radA 7707470..7708837 (-) 1368 WP_039298540.1 DNA repair protein RadA Machinery gene
  P40081_RS32935 (P40081_34335) clpC 7709063..7711540 (-) 2478 WP_042140146.1 ATP-dependent protease ATP-binding subunit ClpC -
  P40081_RS32940 (P40081_34340) - 7711577..7712641 (-) 1065 WP_039298534.1 protein arginine kinase -
  P40081_RS32945 (P40081_34345) - 7712671..7713195 (-) 525 WP_039298531.1 UvrB/UvrC motif-containing protein -
  P40081_RS32950 (P40081_34350) - 7713226..7713687 (-) 462 WP_039298529.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49756.69 Da        Isoelectric Point: 6.5040

>NTDB_id=128034 P40081_RS32930 WP_039298540.1 7707470..7708837(-) (radA) [Paenibacillus sp. FSL P4-0081]
MAKPKTKFFCTECGYESPKWFGKCPGCQEWNSMVEETESVVKTQGMNAPIFQSKEKAQSIINIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIKPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEVGLTEVENPSELFLSERPLGVAGSAVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAVAISIASSFRDIPTKPYDVFFGEVGLTGE
VRGVSRAEMRVKEAAKLGFRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=128034 P40081_RS32930 WP_039298540.1 7707470..7708837(-) (radA) [Paenibacillus sp. FSL P4-0081]
ATGGCCAAACCAAAAACAAAATTTTTCTGCACCGAATGTGGTTACGAATCACCGAAATGGTTCGGGAAATGCCCGGGCTG
CCAGGAATGGAACTCAATGGTGGAAGAAACGGAAAGCGTAGTCAAAACCCAAGGCATGAATGCACCTATTTTTCAGAGTA
AAGAAAAGGCGCAATCGATCATAAATATAGAAAGTGACAAAGAGCCGCGTATCCTGACAGGCATCGGAGAGCTTAACCGT
GTGCTTGGCGGCGGTATCGTACCCGGCTCGCTGGTACTGGTCGGTGGCGACCCCGGAATCGGGAAGTCCACACTGCTGCT
GCAGACATCGCACGCCCTTACAACCCAGGGGCTCCGTGTTCTGTATATCTCCGGGGAAGAATCGGTGCGCCAGACCAAGC
TTCGGGCTGACCGCCTCGGGGCGTTGTCGGCGGAACTGTATGTTCTGTGTGAGACGAACATGGAGAGCATTGAAGAAGCA
ATCGAGCAGATTAAGCCGCAGTTTCTGGTCATCGACTCGATCCAGACCGTATTTATGCCTGAAGTGACCAGTGCGCCAGG
CAGTGTAACACAGGTGCGGGAATGTACGACAAGATTTATGCGGATTGCCAAAATCCGTGGAATCGCAACGGTACTTGTAG
GACATGTAACGAAAGAAGGCGCAATTGCCGGTCCACGGATGCTGGAGCATATGGTGGACTGTGTGCTCTATTTCGAAGGG
GAACGTCATCATACGTACCGGTTGCTGCGTGCGGTGAAGAACCGCTTTGGCTCAACCAATGAAATCGGTATTTTCGAGAT
GGGTGAGGTTGGCCTTACCGAGGTGGAGAACCCTTCCGAGCTGTTTCTTTCTGAACGGCCGCTCGGAGTGGCCGGTTCCG
CGGTTGTAGCCAGCATGGAAGGCACAAGACCGGTGCTTGTTGAATTACAGGCGCTGGTTGCAGCAACCCATTTCCCTTCG
CCCCGCAGAATGTGCACAGGTATGGATCATCAGAGAATGGCGCTGATCATTGCTGTCCTGGAGAAACGGATGGGCATGTT
CCTGCAGAATCAGGATGCTTACCTCAATGTTGCCGGAGGTGTTAAGCTGGATGAGCCGGCGGTGGATCTGGCTGTCGCCA
TCAGTATTGCTTCCAGCTTCCGGGATATTCCGACCAAGCCGTATGATGTGTTTTTTGGGGAGGTAGGACTTACCGGCGAG
GTGAGAGGGGTGTCACGCGCAGAGATGCGGGTGAAGGAGGCCGCTAAGCTCGGCTTCCGGCGGGTAATTATGCCTGAGAA
AAGCATGAAAGGCTGGAAGCATCCGCAGGATATCCAGATTATAGGCGTCAGCACCGTAGCAGATGCACTAGCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.657
  radA Streptococcus mitis NCTC 12261

58.444

98.901

0.578
  radA Streptococcus pneumoniae Rx1

58.444

98.901

0.578
  radA Streptococcus pneumoniae D39

58.444

98.901

0.578
  radA Streptococcus pneumoniae R6

58.444

98.901

0.578
  radA Streptococcus pneumoniae TIGR4

58.444

98.901

0.578
  radA Streptococcus mitis SK321

58.444

98.901

0.578

Multiple sequence alignment