Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P40081_RS27140 Genome accession   NZ_CP009280
Coordinates   6394538..6394978 (+) Length   146 a.a.
NCBI ID   WP_042139305.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL P4-0081     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 6389538..6399978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P40081_RS27115 (P40081_28285) - 6389787..6390473 (-) 687 WP_042139301.1 M15 family metallopeptidase -
  P40081_RS39130 - 6390725..6390886 (+) 162 WP_197074292.1 hypothetical protein -
  P40081_RS27120 (P40081_28295) - 6390923..6391258 (-) 336 WP_042139302.1 YolD-like family protein -
  P40081_RS27125 (P40081_28300) - 6391503..6392123 (-) 621 WP_144026073.1 hypothetical protein -
  P40081_RS36725 - 6392322..6392819 (+) 498 WP_052422036.1 PH domain-containing protein -
  P40081_RS27135 (P40081_28310) - 6392835..6394310 (-) 1476 WP_052422201.1 glycosyl hydrolase -
  P40081_RS27140 (P40081_28315) nucA/comI 6394538..6394978 (+) 441 WP_042139305.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P40081_RS27145 (P40081_28320) - 6395218..6395355 (+) 138 WP_156118708.1 hypothetical protein -
  P40081_RS38750 - 6395404..6395559 (-) 156 WP_155991357.1 hypothetical protein -
  P40081_RS37900 - 6395729..6395905 (+) 177 WP_076243860.1 YjfB family protein -
  P40081_RS27150 (P40081_28335) - 6396049..6396591 (+) 543 WP_042139306.1 ImmA/IrrE family metallo-endopeptidase -
  P40081_RS38755 - 6396679..6396843 (+) 165 WP_156118709.1 hypothetical protein -
  P40081_RS27160 (P40081_28350) - 6397341..6397538 (-) 198 WP_042139308.1 hypothetical protein -
  P40081_RS27165 (P40081_28355) - 6397650..6398414 (+) 765 WP_042139310.1 hypothetical protein -
  P40081_RS38765 - 6398368..6398631 (-) 264 WP_156118712.1 hypothetical protein -
  P40081_RS27170 (P40081_28360) - 6398719..6398988 (-) 270 WP_042139311.1 hypothetical protein -
  P40081_RS27175 (P40081_28365) - 6399090..6399449 (-) 360 WP_042139312.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16185.06 Da        Isoelectric Point: 4.4335

>NTDB_id=128027 P40081_RS27140 WP_042139305.1 6394538..6394978(+) (nucA/comI) [Paenibacillus sp. FSL P4-0081]
MKAKKFITSLIIVVLLSLAAYYFGENGQLPSQTPSSDNSEVVRLEFPSGRYPETARHIQEAIENGESPICTIDRNEAEEN
RKESLKGVPTKKGYDRDEWPMAMCAEGGAGADIEYITPSDNRGAGSWVGNQLEDFADGTRVEFMFK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=128027 P40081_RS27140 WP_042139305.1 6394538..6394978(+) (nucA/comI) [Paenibacillus sp. FSL P4-0081]
ATGAAAGCCAAAAAATTCATCACCAGTCTCATTATTGTTGTTCTGCTCAGCCTGGCTGCTTACTACTTCGGGGAGAATGG
TCAGCTTCCGTCCCAGACGCCGTCTTCTGACAATTCGGAGGTTGTCCGGCTGGAATTCCCATCGGGCCGCTATCCGGAGA
CCGCCAGACATATTCAGGAAGCGATTGAGAACGGGGAGTCCCCCATCTGCACGATTGACCGGAATGAAGCCGAAGAGAAC
CGTAAGGAATCCCTGAAGGGCGTACCCACCAAAAAAGGTTATGACCGCGACGAATGGCCGATGGCGATGTGTGCGGAAGG
TGGAGCCGGCGCTGATATTGAATACATAACTCCCAGCGATAACCGCGGAGCTGGAAGCTGGGTCGGCAATCAGCTGGAGG
ACTTCGCAGACGGTACCCGCGTAGAGTTCATGTTCAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.185

81.507

0.507

Multiple sequence alignment