Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H70737_RS26920 Genome accession   NZ_CP009279
Coordinates   6136393..6137760 (-) Length   455 a.a.
NCBI ID   WP_042131247.1    Uniprot ID   A0A089IPD8
Organism   Paenibacillus sp. FSL H7-0737     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6131393..6142760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H70737_RS26895 (H70737_27680) ispF 6131953..6132441 (-) 489 WP_042192203.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  H70737_RS26900 (H70737_27685) ispD 6132438..6133136 (-) 699 WP_042192206.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  H70737_RS26905 (H70737_27690) - 6133232..6134320 (-) 1089 WP_042131244.1 PIN/TRAM domain-containing protein -
  H70737_RS26910 (H70737_27695) pssA 6134500..6135237 (-) 738 WP_042192208.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  H70737_RS26915 (H70737_27700) disA 6135302..6136378 (-) 1077 WP_042131246.1 DNA integrity scanning diadenylate cyclase DisA -
  H70737_RS26920 (H70737_27705) radA 6136393..6137760 (-) 1368 WP_042131247.1 DNA repair protein RadA Machinery gene
  H70737_RS26925 (H70737_27710) clpC 6137953..6140421 (-) 2469 WP_042131248.1 ATP-dependent protease ATP-binding subunit ClpC -
  H70737_RS26930 (H70737_27715) - 6140457..6141521 (-) 1065 WP_042192210.1 protein arginine kinase -
  H70737_RS26935 (H70737_27720) - 6141550..6142074 (-) 525 WP_042192214.1 UvrB/UvrC motif-containing protein -
  H70737_RS26940 (H70737_27725) - 6142105..6142566 (-) 462 WP_042131251.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49666.49 Da        Isoelectric Point: 6.5864

>NTDB_id=128001 H70737_RS26920 WP_042131247.1 6136393..6137760(-) (radA) [Paenibacillus sp. FSL H7-0737]
MAKPKTKFFCTDCGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMNAPIFHSKEKAQSIISIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEVGLTEVENPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHFPS
PRRVCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAEMRVKEAAKLGFRRVIMPEKSLKGWKHPQDIQIIGVSTVADALSVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=128001 H70737_RS26920 WP_042131247.1 6136393..6137760(-) (radA) [Paenibacillus sp. FSL H7-0737]
ATGGCTAAACCAAAAACTAAATTTTTTTGCACCGATTGTGGATACGAATCGCCAAAATGGTTCGGAAAATGTCCCGGGTG
CCAAGCTTGGAACTCCATGGTGGAGGAAACGGAAAGCGTAGTCAAAACACAGGGAATGAATGCCCCTATTTTTCATAGTA
AAGAAAAGGCACAATCGATCATAAGTATAGAAAGTGACAAGGAACCGCGCATACTGACAGGTATAGGTGAGCTTAACCGT
GTTCTCGGTGGGGGGATCGTGCCAGGATCGCTGGTACTAGTAGGGGGAGACCCAGGAATCGGTAAATCTACGCTCTTATT
ACAGACTTCGCATGCTCTGACAACTCAGGGATTGCGAGTGCTGTACATTTCGGGCGAAGAATCGGTAAGGCAAACAAAAC
TACGTGCGGATCGCCTCGGTGCGTTGTCAGCTGAGCTATATGTACTATGTGAGACGAATATGGAAAGCATAGAAGAAGCG
ATTGAACAAATTCAGCCGCAATTTCTTGTTATCGATTCGATTCAGACTGTATTTATGCCAGAAGTAACTAGTGCGCCAGG
CAGTGTGACCCAGGTTCGGGAATGTACGACAAGATTTATGCGTATCGCTAAGATTCGGGGAATTGCTACAGTTCTCGTTG
GGCATGTCACCAAGGAAGGCGCTATTGCAGGCCCACGGATGCTTGAACATATGGTGGATTGTGTGCTGTATTTTGAGGGA
GAGCGGCATCATACGTATAGACTCCTGCGGGCTGTAAAGAACCGCTTCGGTTCAACGAATGAAATCGGCATTTTCGAAAT
GGGTGAAGTGGGTCTAACAGAAGTAGAAAATCCATCGGAGCTCTTCTTATCTGAGCGTCCACTCGGCGTAGCCGGATCTA
CAGTCGTGGCTAGTATGGAAGGGACTAGACCGGTGCTTGTTGAGCTTCAGGCTCTTATCGCTGCCACTCATTTCCCCTCC
CCACGCCGGGTGTGCACAGGTATGGATCACCAGCGGATGGCACTCATTATCGCTGTACTTGAGAAGCGGATGGGCATGTT
CCTGCAAAATCAGGATGCATACCTTAATGTTGCTGGAGGCGTGAAGCTGGATGAACCGGCGATTGATTTAGCAGTAGCTG
TTAGTATCGCTTCCAGCTTTCGTGATATTTCAACAAAACCTTACGATGTTTTCTTCGGTGAAGTAGGACTTACAGGTGAA
GTAAGAGGTGTTTCACGCGCGGAAATGCGTGTGAAGGAGGCCGCGAAGCTAGGCTTCCGGCGGGTGATCATGCCAGAGAA
AAGTTTGAAGGGCTGGAAGCACCCGCAAGATATCCAGATTATTGGCGTCAGTACCGTAGCAGATGCACTATCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089IPD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.449

100

0.67
  radA Streptococcus pneumoniae Rx1

58.889

98.901

0.582
  radA Streptococcus pneumoniae D39

58.889

98.901

0.582
  radA Streptococcus pneumoniae R6

58.889

98.901

0.582
  radA Streptococcus pneumoniae TIGR4

58.889

98.901

0.582
  radA Streptococcus mitis NCTC 12261

58.889

98.901

0.582
  radA Streptococcus mitis SK321

58.889

98.901

0.582

Multiple sequence alignment