Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KR75_RS16950 Genome accession   NZ_CP009274
Coordinates   3578105..3578701 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain DX120E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573105..3583701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR75_RS16935 (KR75_17090) helD 3573313..3575367 (-) 2055 WP_012968608.1 DNA helicase IV -
  KR75_RS16940 (KR75_17085) - 3575492..3575938 (+) 447 WP_008805896.1 YccF domain-containing protein -
  KR75_RS16945 (KR75_17080) yccS 3575956..3578091 (+) 2136 WP_039103046.1 YccS family putative transporter -
  KR75_RS16950 (KR75_17075) sxy/tfoX 3578105..3578701 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  KR75_RS16955 (KR75_17070) sulA 3579052..3579561 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  KR75_RS16960 (KR75_17065) ompA 3579914..3580966 (+) 1053 WP_008805892.1 porin OmpA -
  KR75_RS16965 (KR75_17060) matP 3581077..3581529 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  KR75_RS16970 (KR75_17055) - 3581715..3583472 (+) 1758 WP_039103045.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=127954 KR75_RS16950 WP_012542296.1 3578105..3578701(-) (sxy/tfoX) [Klebsiella variicola strain DX120E]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=127954 KR75_RS16950 WP_012542296.1 3578105..3578701(-) (sxy/tfoX) [Klebsiella variicola strain DX120E]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment