Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JV59_RS13100 Genome accession   NZ_CP009264
Coordinates   2818267..2818785 (-) Length   172 a.a.
NCBI ID   WP_006957088.1    Uniprot ID   A0A097QN45
Organism   Vibrio coralliilyticus strain OCN014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2813267..2823785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS13080 (JV59_37155) - 2815426..2816682 (-) 1257 WP_029236357.1 HD-GYP domain-containing protein -
  JV59_RS13085 (JV59_37160) - 2816801..2817208 (-) 408 WP_006957092.1 VOC family protein -
  JV59_RS13095 (JV59_37170) - 2817745..2818221 (+) 477 WP_038513588.1 RDD family protein -
  JV59_RS13100 (JV59_37175) luxS 2818267..2818785 (-) 519 WP_006957088.1 S-ribosylhomocysteine lyase Regulator
  JV59_RS13105 (JV59_37180) - 2818810..2819406 (-) 597 WP_038513591.1 hypothetical protein -
  JV59_RS13110 (JV59_37185) gshA 2819416..2820984 (-) 1569 WP_038514895.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.83 Da        Isoelectric Point: 4.7134

>NTDB_id=127863 JV59_RS13100 WP_006957088.1 2818267..2818785(-) (luxS) [Vibrio coralliilyticus strain OCN014]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=127863 JV59_RS13100 WP_006957088.1 2818267..2818785(-) (luxS) [Vibrio coralliilyticus strain OCN014]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACTCGTATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGTGATACCATTACTGTGTTTGACCTGCGTTTTACTGCACCAAACAAAGACATTCTTTCTGAGAAAGGCATTC
ACACACTGGAACACTTATACGCAGGTTTCATGCGCAGTCACTTAAACGGTGATAGCGTAGAAATTATCGATATTTCGCCA
ATGGGCTGCCGTACTGGCTTTTACATGAGCCTGATTGGCACACCAACAGAAGAGCAGGTAGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAATTAAACGAATATCAATGTGGCACTGCTGCGATGC
ACTCTCTTGAGGAAGCTAAACAGATTGCTCAAGCTATAATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAGTCAATGCTTAAAGAGCTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QN45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment