Detailed information NTG0127846

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JV59_RS01385
• Genome accession: NZ_CP009264
• Coordinates: 260951..261934 (+)
• Length: 327 a.a.
• NCBI ID: WP_006958149.1
• Uniprot ID: A0A097AVA5
• Organism: Vibrio coralliilyticus strain OCN014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 255951..266934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JV59_RS01350 (JV59_26560)	ftsB	256025..256303 (+)	279	WP_038509616.1	cell division protein FtsB	-
JV59_RS01355 (JV59_01335)	ispD	256306..257010 (+)	705	WP_038509618.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JV59_RS01360 (JV59_01340)	ispF	257014..257493 (+)	480	WP_038509621.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JV59_RS01365 (JV59_01345)	truD	257540..258586 (+)	1047	WP_038509623.1	tRNA pseudouridine(13) synthase TruD	-
JV59_RS01370 (JV59_01350)	surE	258598..259341 (+)	744	WP_172845461.1	5'/3'-nucleotidase SurE	-
JV59_RS01375 (JV59_01355)	-	259344..259970 (+)	627	WP_038509628.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JV59_RS01380 (JV59_01360)	nlpD	259973..260884 (+)	912	WP_038509630.1	murein hydrolase activator NlpD	-
JV59_RS01385 (JV59_01365)	rpoS	260951..261934 (+)	984	WP_006958149.1	RNA polymerase sigma factor RpoS	Regulator
JV59_RS01390 (JV59_01370)	-	261999..263276 (-)	1278	WP_038509633.1	HlyC/CorC family transporter	-
JV59_RS01395 (JV59_01375)	-	263399..264193 (-)	795	WP_038164050.1	inner membrane protein YpjD	-
JV59_RS01400 (JV59_01380)	ffh	264399..265790 (+)	1392	WP_021458280.1	signal recognition particle protein	-
JV59_RS01405 (JV59_26565)	rpsP	265999..266247 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
JV59_RS01410 (JV59_01390)	rimM	266277..266825 (+)	549	WP_029236289.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37396.39 Da
• Isoelectric Point: 4.7232

>NTDB_id=127846 JV59_RS01385 WP_006958149.1 260951..261934(+) (rpoS) [Vibrio coralliilyticus strain OCN014]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE

Nucleotide

• Length: 984 bp

>NTDB_id=127846 JV59_RS01385 WP_006958149.1 260951..261934(+) (rpoS) [Vibrio coralliilyticus strain OCN014]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGAT
TCCGATTCTCGACCTATGCTACTTGGTGGATCCGTCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAAGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
AACAGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAACGAACGAATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTGCTAGATATTATTCCTGATGTGAACAACTCTGATCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
TTTAGCACGTCGTTTTGGATTGCTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGCGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

3D structure

• AlphaFold DB: A0A097AVA5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85