Detailed information NTG0127818

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VV93_RS12745
• Genome accession: NZ_CP009261
• Coordinates: 2784818..2785810 (-)
• Length: 330 a.a.
• NCBI ID: WP_039554643.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 93U204
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2779818..2790810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV93_RS12725 (VV93_v1c25150)	recX	2779846..2780307 (-)	462	WP_011079525.1	recombination regulator RecX	-
VV93_RS12730 (VV93_v1c25160)	recA	2780411..2781460 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
VV93_RS12735 (VV93_v1c25170)	pncC	2781594..2782097 (-)	504	WP_039554640.1	nicotinamide-nucleotide amidase	-
VV93_RS12740 (VV93_v1c25180)	mutS	2782181..2784742 (+)	2562	WP_039554641.1	DNA mismatch repair protein MutS	-
VV93_RS12745 (VV93_v1c25190)	rpoS	2784818..2785810 (-)	993	WP_039554643.1	RNA polymerase sigma factor RpoS	Regulator
VV93_RS12750 (VV93_v1c25200)	-	2785891..2786787 (-)	897	WP_039554645.1	peptidoglycan DD-metalloendopeptidase family protein	-
VV93_RS12755 (VV93_v1c25210)	-	2786831..2787457 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VV93_RS12760 (VV93_v1c25220)	surE	2787460..2788227 (-)	768	WP_039554647.1	5'/3'-nucleotidase SurE	-
VV93_RS12765 (VV93_v1c25230)	truD	2788233..2789276 (-)	1044	WP_039554649.1	tRNA pseudouridine(13) synthase TruD	-
VV93_RS12770 (VV93_v1c25240)	ispF	2789312..2789788 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VV93_RS12775 (VV93_v1c25250)	ispD	2789785..2790498 (-)	714	WP_039554651.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VV93_RS12780 (VV93_v1c25260)	ftsB	2790498..2790779 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38040.10 Da
• Isoelectric Point: 4.5074

>NTDB_id=127818 VV93_RS12745 WP_039554643.1 2784818..2785810(-) (rpoS) [Vibrio vulnificus strain 93U204]
MSISNTVTKVKNFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=127818 VV93_RS12745 WP_039554643.1 2784818..2785810(-) (rpoS) [Vibrio vulnificus strain 93U204]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAAATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAATAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTGTTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATTTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAACCAACCGCTGAAGAGATCGCTGCACAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACACCGATTGGTGGAGATGGGGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTTTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATAGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833