Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VV93_RS12625 Genome accession   NZ_CP009261
Coordinates   2762925..2763443 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain 93U204     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2757925..2768443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS12600 (VV93_v1c24980) rimM 2757993..2758541 (-) 549 WP_039554622.1 ribosome maturation factor RimM -
  VV93_RS12605 (VV93_v1c24990) rpsP 2758557..2758805 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  VV93_RS12610 (VV93_v1c25000) ffh 2759087..2760463 (-) 1377 WP_011079540.1 signal recognition particle protein -
  VV93_RS12615 (VV93_v1c25010) - 2760677..2761471 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  VV93_RS12620 (VV93_v1c25020) - 2761558..2762835 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  VV93_RS12625 (VV93_v1c25030) luxS 2762925..2763443 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  VV93_RS12630 (VV93_v1c25040) - 2763494..2764099 (-) 606 WP_235203715.1 hypothetical protein -
  VV93_RS12635 (VV93_v1c25050) gshA 2764137..2765702 (-) 1566 WP_039554626.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=127815 VV93_RS12625 WP_011079537.1 2762925..2763443(-) (luxS) [Vibrio vulnificus strain 93U204]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=127815 VV93_RS12625 WP_011079537.1 2762925..2763443(-) (luxS) [Vibrio vulnificus strain 93U204]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACCGCAGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCACAAAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAATGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment