Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VV93_RS07065 Genome accession   NZ_CP009261
Coordinates   1513076..1514497 (-) Length   473 a.a.
NCBI ID   WP_039553414.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1508076..1519497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS07035 (VV93_v1c13750) - 1508484..1509251 (+) 768 WP_011080632.1 phospholipase A -
  VV93_RS07040 (VV93_v1c13760) - 1509490..1509894 (+) 405 WP_011080631.1 hypothetical protein -
  VV93_RS07045 (VV93_v1c13770) - 1509968..1511071 (-) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  VV93_RS07050 (VV93_v1c13780) - 1511274..1511666 (-) 393 WP_011080629.1 SulA-like leucine-rich domain-containing protein -
  VV93_RS07055 (VV93_v1c13790) - 1511978..1512655 (-) 678 WP_011080628.1 LrgB family protein -
  VV93_RS07060 (VV93_v1c13800) - 1512658..1513029 (-) 372 WP_011080627.1 CidA/LrgA family protein -
  VV93_RS07065 (VV93_v1c13810) sbcB 1513076..1514497 (-) 1422 WP_039553414.1 exodeoxyribonuclease I Machinery gene
  VV93_RS07070 (VV93_v1c13820) - 1514571..1515269 (-) 699 WP_011080625.1 oxidoreductase -
  VV93_RS07080 (VV93_v1c13840) cobT 1515807..1516835 (+) 1029 WP_039553417.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VV93_RS07085 (VV93_v1c13850) - 1516837..1517604 (+) 768 WP_039553419.1 adenosylcobinamide-GDP ribazoletransferase -
  VV93_RS07090 (VV93_v1c13860) cobU 1517607..1518167 (+) 561 WP_011080622.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  VV93_RS07095 (VV93_v1c13870) cobC 1518177..1518815 (+) 639 WP_039553421.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54859.16 Da        Isoelectric Point: 5.2612

>NTDB_id=127805 VV93_RS07065 WP_039553414.1 1513076..1514497(-) (sbcB) [Vibrio vulnificus strain 93U204]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTMLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFERRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=127805 VV93_RS07065 WP_039553414.1 1513076..1514497(-) (sbcB) [Vibrio vulnificus strain 93U204]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTAGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGCGTAGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCACTTGAATAAGTGCCCGATTTTAGCGCCAGCCAAAACCCTCACAGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCATGCTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCACTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGGCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment