Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VV93_RS05725 Genome accession   NZ_CP009261
Coordinates   1213801..1215201 (+) Length   466 a.a.
NCBI ID   WP_039553213.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208801..1220201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS05705 (VV93_v1c11110) rsxB 1209438..1210034 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  VV93_RS05710 (VV93_v1c11120) rsxA 1210036..1210614 (-) 579 WP_011080895.1 electron transport complex subunit RsxA -
  VV93_RS05720 (VV93_v1c11130) uvrB 1211496..1213526 (+) 2031 WP_039553211.1 excinuclease ABC subunit UvrB -
  VV93_RS05725 (VV93_v1c11140) luxO 1213801..1215201 (+) 1401 WP_039553213.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VV93_RS05730 (VV93_v1c11150) luxU 1215201..1215548 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  VV93_RS05735 (VV93_v1c11160) - 1215649..1216539 (-) 891 WP_011080890.1 YvcK family protein -
  VV93_RS05740 (VV93_v1c11170) moaA 1216855..1217844 (+) 990 WP_039553216.1 GTP 3',8-cyclase MoaA -
  VV93_RS05745 (VV93_v1c11180) moaB 1217925..1218437 (+) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  VV93_RS05750 (VV93_v1c11190) moaC 1218448..1218927 (+) 480 WP_011080887.1 cyclic pyranopterin monophosphate synthase MoaC -
  VV93_RS05755 (VV93_v1c11200) moaD 1218924..1219169 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  VV93_RS05760 (VV93_v1c11210) moaE 1219171..1219626 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52218.87 Da        Isoelectric Point: 6.7623

>NTDB_id=127801 VV93_RS05725 WP_039553213.1 1213801..1215201(+) (luxO) [Vibrio vulnificus strain 93U204]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESKLFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLRYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=127801 VV93_RS05725 WP_039553213.1 1213801..1215201(+) (luxO) [Vibrio vulnificus strain 93U204]
ATGCAACAAATAACGACAACGAAACAGCGCTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCACTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCTATGCGACATGGGTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGCAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCTGCAATTCCCAAGGATTTGATTGAAAGCA
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTTTTCCTGGATGAGTTGTGTGAAATGGACCTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCGAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGCGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.268

96.137

0.82

Multiple sequence alignment