Detailed information NTG0127794

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: HPYLSS1_RS07505
• Genome accession: NZ_CP009259
• Coordinates: 1534290..1535729 (-)
• Length: 479 a.a.
• NCBI ID: WP_077232555.1
• Uniprot ID: -
• Organism: Helicobacter pylori SS1
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1529290..1540729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPYLSS1_RS07480 (HPYLSS1_01450)	recG	1530422..1532293 (-)	1872	WP_077232552.1	ATP-dependent DNA helicase RecG	-
HPYLSS1_RS07485 (HPYLSS1_01451)	-	1532375..1532722 (+)	348	WP_000837036.1	hypothetical protein	-
HPYLSS1_RS07490 (HPYLSS1_01452)	-	1532726..1533361 (+)	636	WP_077232553.1	outer membrane protein	-
HPYLSS1_RS07495 (HPYLSS1_01453)	-	1533358..1534110 (-)	753	WP_077232554.1	exodeoxyribonuclease III	-
HPYLSS1_RS07505 (HPYLSS1_01455)	comH	1534290..1535729 (-)	1440	WP_077232555.1	competence protein	Machinery gene
HPYLSS1_RS07510 (HPYLSS1_01456)	dnaA	1535950..1537323 (-)	1374	WP_077232556.1	chromosomal replication initiator protein DnaA	-
HPYLSS1_RS07515 (HPYLSS1_01457)	-	1537476..1538018 (+)	543	WP_077232557.1	purine-nucleoside phosphorylase	-
HPYLSS1_RS07520 (HPYLSS1_01458)	-	1538061..1538300 (+)	240	WP_000461837.1	DUF2443 domain-containing protein	-
HPYLSS1_RS07525 (HPYLSS1_01459)	glmS	1538301..1540094 (+)	1794	WP_077232558.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 54787.64 Da
• Isoelectric Point: 6.5117

>NTDB_id=127794 HPYLSS1_RS07505 WP_077232555.1 1534290..1535729(-) (comH) [Helicobacter pylori SS1]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPANETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNDTSNADINENNESNENRDNVEKQAVRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide

• Length: 1440 bp

>NTDB_id=127794 HPYLSS1_RS07505 WP_077232555.1 1534290..1535729(-) (comH) [Helicobacter pylori SS1]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACCGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAATAAACCCAGTTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGTCCCGCTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
ATGAAAACAATGAAAGCAACGAAAATAGGGACAATGTGGAAAAACAAGCCGTTAGAGATCCTAATATTAAAGAATTTGCA
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGACAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AGATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAAGGGCATTATTTAAACGATATAATCAAAGAGAGCAGCGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	96.66	100	0.967