Detailed information NTG0127763

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: U069_RS14100
• Genome accession: NZ_CP011343
• Coordinates: 2841436..2842428 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli K-12 substr. GM4792
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2836436..2847428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U069_RS14080	otnK	2837212..2838378 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
U069_RS14085 (U069_c2843)	ygbL	2838470..2839108 (+)	639	WP_001278994.1	aldolase	-
U069_RS14090	ygbM	2839113..2839889 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
U069_RS14095 (U069_c2844)	ygbN	2839978..2841342 (+)	1365	WP_000104441.1	GntP family transporter	-
U069_RS14100 (U069_c2845)	rpoS	2841436..2842428 (-)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
U069_RS14105 (U069_c2846)	nlpD	2842491..2843585 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
U069_RS14110 (U069_c2847)	pcm	2843770..2844396 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
U069_RS14115 (U069_c2848)	surE	2844390..2845151 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
U069_RS14120 (U069_c2849)	truD	2845132..2846181 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
U069_RS14125 (U069_c2850)	ispF	2846178..2846657 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
U069_RS14130 (U069_c2851)	ispD	2846657..2847367 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=127763 U069_RS14100 WP_000081586.1 2841436..2842428(-) (rpoS) [Escherichia coli K-12 substr. GM4792]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=127763 U069_RS14100 WP_000081586.1 2841436..2842428(-) (rpoS) [Escherichia coli K-12 substr. GM4792]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAATTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715