Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AAF13_RS22775 Genome accession   NZ_CP011331
Coordinates   4519970..4520962 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli O104:H4 str. C227-11 isolate 368 shch     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4514970..4525962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF13_RS22765 (AAF13_22765) yieP 4517862..4518554 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AAF13_RS22770 (AAF13_22770) mdtD 4518577..4520004 (+) 1428 WP_001280833.1 multidrug transporter subunit MdtD -
  AAF13_RS22775 (AAF13_22775) cytR 4519970..4520962 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  AAF13_RS22780 (AAF13_22780) rbsK 4520966..4521895 (-) 930 WP_001300603.1 ribokinase -
  AAF13_RS22785 (AAF13_22785) rbsB 4522021..4522911 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AAF13_RS22790 (AAF13_22790) rbsC 4522936..4523901 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AAF13_RS22795 (AAF13_22795) rbsA 4523906..4525411 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  AAF13_RS22800 (AAF13_22800) rbsD 4525419..4525838 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=127622 AAF13_RS22775 WP_000224470.1 4519970..4520962(-) (cytR) [Escherichia coli O104:H4 str. C227-11 isolate 368 shch]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=127622 AAF13_RS22775 WP_000224470.1 4519970..4520962(-) (cytR) [Escherichia coli O104:H4 str. C227-11 isolate 368 shch]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTACTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGTTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment