Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LM850658_RS06680 Genome accession   NZ_CP009242
Coordinates   1324653..1326344 (+) Length   563 a.a.
NCBI ID   WP_012581359.1    Uniprot ID   A0A0E0UWH3
Organism   Listeria monocytogenes strain LM850658     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1319653..1331344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM850658_RS06655 (LM850658_06760) - 1319802..1320683 (+) 882 WP_012581362.1 polyprenyl synthetase family protein -
  LM850658_RS06660 (LM850658_06765) - 1320882..1321082 (+) 201 WP_003719639.1 cold-shock protein -
  LM850658_RS06665 (LM850658_06770) dxs 1321250..1323169 (+) 1920 WP_077904917.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LM850658_RS06670 (LM850658_06775) - 1323166..1323990 (+) 825 WP_012581360.1 TlyA family RNA methyltransferase -
  LM850658_RS06675 (LM850658_06780) ahrC 1324181..1324630 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  LM850658_RS06680 (LM850658_06785) recN 1324653..1326344 (+) 1692 WP_012581359.1 DNA repair protein RecN Machinery gene
  LM850658_RS06685 (LM850658_06790) - 1326474..1327340 (+) 867 WP_012581358.1 phosphate acyltransferase -
  LM850658_RS06690 (LM850658_06795) buk 1327477..1328544 (+) 1068 WP_012581357.1 butyrate kinase -
  LM850658_RS06695 (LM850658_06800) lpdA 1328559..1329986 (+) 1428 WP_012581356.1 dihydrolipoyl dehydrogenase -
  LM850658_RS06700 (LM850658_06805) - 1330011..1331006 (+) 996 WP_012581355.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63527.27 Da        Isoelectric Point: 5.1956

>NTDB_id=127573 LM850658_RS06680 WP_012581359.1 1324653..1326344(+) (recN) [Listeria monocytogenes strain LM850658]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFHPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=127573 LM850658_RS06680 WP_012581359.1 1324653..1326344(+) (recN) [Listeria monocytogenes strain LM850658]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGACT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAACTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGAGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAGTTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCACCCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTAAAAGCAGAACTAACAAAACAGGCGAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACGTTAGAGAAGCAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTCCTATGCATTAGCCATTTGCCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGGGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UWH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535

Multiple sequence alignment