Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   YH61_RS04380 Genome accession   NZ_CP011330
Coordinates   946628..947086 (+) Length   152 a.a.
NCBI ID   WP_000783567.1    Uniprot ID   Q9ZMW8
Organism   Helicobacter pylori J99     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 941628..952086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YH61_RS04360 (YH61_04355) dnaK 941693..943555 (+) 1863 WP_046655882.1 molecular chaperone DnaK -
  YH61_RS04365 (YH61_04360) - 943816..944387 (-) 572 Protein_871 hypothetical protein -
  YH61_RS04370 (YH61_04365) - 944506..945423 (+) 918 WP_046655885.1 O-acetylserine-dependent cystathionine beta-synthase -
  YH61_RS04375 (YH61_04370) - 945448..946590 (+) 1143 WP_046655887.1 cystathionine gamma-synthase -
  YH61_RS04380 (YH61_04375) luxS 946628..947086 (+) 459 WP_000783567.1 S-ribosylhomocysteine lyase Regulator
  YH61_RS04385 (YH61_04380) - 947260..948972 (+) 1713 WP_307772107.1 5'-nucleotidase C-terminal domain-containing protein -
  YH61_RS04390 (YH61_04385) tlpB 949185..950882 (+) 1698 WP_046655891.1 methyl-accepting chemotaxis protein TlpB -
  YH61_RS04395 (YH61_04390) - 950914..951696 (+) 783 WP_046655895.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17423.87 Da        Isoelectric Point: 6.8403

>NTDB_id=127535 YH61_RS04380 WP_000783567.1 946628..947086(+) (luxS) [Helicobacter pylori J99]
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=127535 YH61_RS04380 WP_000783567.1 946628..947086(+) (luxS) [Helicobacter pylori J99]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAGAGATCACATGGACATGCCAAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACAGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
CGTGCTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1J6X

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

92.763

0.382

Multiple sequence alignment