Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H70357_RS11620 Genome accession   NZ_CP009241
Coordinates   2695683..2697443 (-) Length   586 a.a.
NCBI ID   WP_038589319.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0357     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2690683..2702443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H70357_RS11600 (H70357_12105) - 2690867..2691802 (+) 936 WP_038589310.1 aminoglycoside phosphotransferase family protein -
  H70357_RS11605 (H70357_12110) - 2691973..2692629 (+) 657 WP_197073683.1 glycerol-3-phosphate acyltransferase -
  H70357_RS11610 (H70357_12115) - 2692693..2695149 (+) 2457 WP_038589313.1 O-antigen ligase family protein -
  H70357_RS11615 (H70357_12120) - 2695314..2695556 (+) 243 WP_038589316.1 hypothetical protein -
  H70357_RS11620 (H70357_12125) rcrQ 2695683..2697443 (-) 1761 WP_038589319.1 ABC transporter ATP-binding protein Regulator
  H70357_RS11625 (H70357_12130) rcrP 2697443..2699194 (-) 1752 WP_038589321.1 ABC transporter ATP-binding protein Regulator
  H70357_RS11630 (H70357_12135) - 2699315..2700370 (-) 1056 WP_038589325.1 HAMP domain-containing sensor histidine kinase -
  H70357_RS11635 (H70357_12140) - 2700367..2701041 (-) 675 WP_038589328.1 response regulator transcription factor -
  H70357_RS11640 (H70357_12145) - 2701280..2701717 (+) 438 WP_038589331.1 LytTR family DNA-binding domain-containing protein -
  H70357_RS11645 (H70357_12150) - 2701730..2702173 (+) 444 WP_038589334.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64417.68 Da        Isoelectric Point: 6.5806

>NTDB_id=127534 H70357_RS11620 WP_038589319.1 2695683..2697443(-) (rcrQ) [Paenibacillus sp. FSL H7-0357]
MNKSKEQLNTWSKLLRYGRKYIPVVLIAIISAAIGTVLTLLGPDKLSEITDLITEGIVTGIDMEAVTSIGLFLVFIYLLS
SVLSLAQGLIMSVVTQKVSKSLRTDLSRKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFVGSLI
MMFKTNVIMTITAIVATVIGFGLMAAIMKKSQKYFQSQQEYLGKINGHVEEVYSGHTVVKAYNGESQMRSTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVAGAILAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDAEEMDNESHKEGHLETAAGKVKFEHVQFAYDNSDKLVIKDFSAEVKPGQKVAIVGPTGAGKTTLVNLLIRFNKLM
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEIEEACKSVGLHHFIQTLSAGYDTVLNDK
VNLSTGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHHELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=127534 H70357_RS11620 WP_038589319.1 2695683..2697443(-) (rcrQ) [Paenibacillus sp. FSL H7-0357]
ATGAACAAGAGCAAAGAGCAACTCAACACCTGGAGCAAACTTCTCCGCTATGGCAGAAAATATATTCCCGTAGTTCTTAT
TGCAATTATCAGCGCAGCAATCGGCACGGTACTGACTTTGCTCGGGCCGGATAAGCTTTCAGAGATAACAGACTTGATCA
CCGAGGGCATCGTCACCGGTATTGATATGGAAGCCGTAACTTCCATTGGACTCTTCCTTGTATTTATCTATCTCCTTAGC
TCTGTATTGTCTTTGGCACAAGGATTAATCATGTCCGTAGTTACACAGAAGGTTTCCAAAAGCTTAAGAACCGATCTCTC
CCGCAAAATGAACAGGCTTCCGATCTCTTATTATAATAAATCTACAACCGGTGACATCCTGTCCCGGGTGACTAACGACG
TGGATACCATCGGGCAAGCCTTAAATCAAAGTGTCGGCACACTGGTCACCGCCCTCGCCCTGTTTGTCGGGTCTCTCATC
ATGATGTTTAAAACAAATGTGATCATGACCATTACAGCGATTGTTGCCACCGTAATTGGCTTTGGTCTCATGGCGGCAAT
TATGAAAAAATCTCAAAAGTATTTTCAAAGCCAGCAAGAATATTTAGGAAAAATCAATGGCCATGTGGAGGAAGTCTATT
CCGGACATACTGTAGTGAAGGCCTACAATGGCGAATCGCAAATGCGGAGTACATTCGAATCTCTGAATATGAATCTTAAA
GATAGCGCATTTAAAGCACAGTTCCTCTCCGGTCTCATGATGCCGATTATGATGTTTATAGGCAATCTGGGGTTTGTGGC
CGTTTGTGTCGCAGGTGCTATACTTGCTATGAACGGAACGATATCCTTTGGGGTTATTGTGGCCTTCATCCTGTATGTCC
GTTATTTTACACAGCCGCTGTCACAGATTGCGCAAGCCGCACAAAGTCTGCAGTCGGCGTCTGCCGCAAGCAAACGTGTC
TTTGAATTCCTGGATGCCGAAGAAATGGACAATGAGAGTCACAAGGAAGGACATCTTGAAACCGCTGCGGGCAAAGTGAA
ATTTGAGCATGTGCAATTTGCTTATGACAATTCAGACAAGCTTGTTATTAAAGATTTCTCTGCAGAGGTTAAGCCTGGAC
AAAAAGTCGCTATAGTCGGTCCTACCGGCGCAGGTAAAACAACGCTTGTAAACCTTCTAATCCGGTTTAATAAATTAATG
GGCGGGGAAATTTATATTGATGATACCCCGATCAGCAGTTTGACCAGAGAAAACATCCATGATTTATTCTGTATGGTTCT
GCAGGATACCTGGCTTTTTGAGGGCACTATCAGGGAAAACCTAGTGTACAACAAAACGGGTGTAACCGATAAAGAAATCG
AAGAGGCTTGTAAGTCAGTGGGCTTGCACCATTTCATACAGACCTTGAGTGCCGGATATGATACCGTGCTCAACGATAAA
GTCAATTTATCTACCGGGCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTTAAGGACGCGCCGATGCTCATCCTTGA
TGAAGCAACAAGCTCGGTCGATACAAGAACAGAGCTGTTGATTCAGCAGGCGATGGATAAGCTCATGGAAGGAAGAACCT
CCTTCGTGATTGCACATAGGCTCTCAACAATTAAGAATGCCGATGTGATTCTGGTTCTGAAGGATGGCGATATCTTGGAA
AGCGGCAGCCATCATGAACTGCTTGCCAAAAATGGCTTCTATGCGGAGCTTTACAATAGCCAATTCGAACAAGCATCTTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(25-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment