Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   NJ8700_RS06125 Genome accession   NZ_CP009230
Coordinates   1353684..1354205 (-) Length   173 a.a.
NCBI ID   WP_005701128.1    Uniprot ID   A0A3S4RIZ1
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348684..1359205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS06110 (NJ8700_06260) comQ 1351985..1352287 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  NJ8700_RS06115 (NJ8700_06265) - 1352271..1352957 (-) 687 WP_005701126.1 DUF2572 family protein -
  NJ8700_RS06120 (NJ8700_06270) - 1352954..1353694 (-) 741 WP_148207231.1 type II secretion system protein J -
  NJ8700_RS06125 (NJ8700_06275) comN 1353684..1354205 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NJ8700_RS06145 (NJ8700_06295) pal 1354951..1355415 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  NJ8700_RS06150 (NJ8700_06300) tolB 1355430..1356710 (-) 1281 WP_005701130.1 Tol-Pal system beta propeller repeat protein TolB -
  NJ8700_RS06155 (NJ8700_06305) tolA 1356746..1357996 (-) 1251 WP_005701131.1 cell envelope integrity protein TolA -
  NJ8700_RS06160 (NJ8700_06310) tolR 1358015..1358437 (-) 423 WP_005701133.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20245.35 Da        Isoelectric Point: 8.2465

>NTDB_id=127402 NJ8700_RS06125 WP_005701128.1 1353684..1354205(-) (comN) [Aggregatibacter aphrophilus NJ8700]
MQKGFTLLEILIALLIISVLLTLSLPAWQQHRQQNILQKEQQKLYIFLRQIQARVENSSDIWFLIANRHQMTQRWCLTAQ
IKSDKLCDCLNPQHCPQEVSAHFYYPTFEDTILISKRYYPFEFTRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=127402 NJ8700_RS06125 WP_005701128.1 1353684..1354205(-) (comN) [Aggregatibacter aphrophilus NJ8700]
ATGCAAAAGGGATTTACCCTGTTAGAAATCTTAATCGCCCTGCTGATAATAAGTGTATTGCTCACATTGTCGCTTCCCGC
ATGGCAGCAGCATCGTCAGCAAAATATTTTGCAGAAAGAACAACAAAAGCTGTATATCTTTTTGCGTCAAATTCAGGCTA
GAGTGGAAAATTCATCCGACATTTGGTTTTTAATTGCGAATCGCCATCAAATGACGCAACGTTGGTGCCTCACTGCTCAA
ATTAAGAGTGACAAATTATGTGATTGCCTCAACCCGCAGCATTGCCCGCAAGAGGTTTCCGCACATTTTTACTATCCTAC
ATTTGAAGACACCATATTAATCAGCAAGCGTTACTATCCTTTTGAATTTACCCGTTTGAGTGGTATTCGGAACACGGCGT
CAACAGCCTGTTTTGTGTTACAAGCGAATCATCAACGAACCCTATTTTCATTTTTTAATGTGGGTAGTTTGAAGTTAAAA
GATAACCAATCCTTAAGCGCCTGTGTTAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4RIZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment