Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   NJ8700_RS06110 Genome accession   NZ_CP009230
Coordinates   1351985..1352287 (-) Length   100 a.a.
NCBI ID   WP_005701125.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346985..1357287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS06095 (NJ8700_06245) - 1347671..1348111 (+) 441 WP_005701122.1 DNA polymerase III subunit psi -
  NJ8700_RS06100 (NJ8700_06250) rimI 1348124..1348567 (+) 444 WP_005701123.1 ribosomal protein S18-alanine N-acetyltransferase -
  NJ8700_RS06105 (NJ8700_06255) recC 1348570..1351947 (-) 3378 WP_012771679.1 exodeoxyribonuclease V subunit gamma -
  NJ8700_RS06110 (NJ8700_06260) comQ 1351985..1352287 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  NJ8700_RS06115 (NJ8700_06265) - 1352271..1352957 (-) 687 WP_005701126.1 DUF2572 family protein -
  NJ8700_RS06120 (NJ8700_06270) - 1352954..1353694 (-) 741 WP_148207231.1 type II secretion system protein J -
  NJ8700_RS06125 (NJ8700_06275) comN 1353684..1354205 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NJ8700_RS06145 (NJ8700_06295) pal 1354951..1355415 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  NJ8700_RS06150 (NJ8700_06300) tolB 1355430..1356710 (-) 1281 WP_005701130.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11683.55 Da        Isoelectric Point: 10.7466

>NTDB_id=127401 NJ8700_RS06110 WP_005701125.1 1351985..1352287(-) (comQ) [Aggregatibacter aphrophilus NJ8700]
MISRLNFIRQKGMSLLSLLVALSLFSGIFLTFNQWGNAQRKSAVEIYQRFQGIQIAENQRQRQFLGLSCESEIYQNHIRF
QVVCRQNQVTVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=127401 NJ8700_RS06110 WP_005701125.1 1351985..1352287(-) (comQ) [Aggregatibacter aphrophilus NJ8700]
ATGATTTCACGCCTTAATTTTATTCGACAGAAAGGCATGAGCTTGCTGTCGTTGTTGGTGGCATTAAGTTTATTTAGCGG
CATTTTTCTCACGTTTAACCAATGGGGTAATGCACAACGTAAAAGTGCGGTGGAAATTTACCAACGTTTTCAAGGAATCC
AAATTGCCGAAAATCAACGGCAACGCCAGTTTCTTGGTTTGTCTTGTGAAAGTGAGATTTACCAAAATCATATTCGTTTT
CAGGTGGTTTGTCGGCAAAATCAGGTAACGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

55.319

94

0.52

Multiple sequence alignment