Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   NJ8700_RS04340 Genome accession   NZ_CP009230
Coordinates   976555..978984 (+) Length   809 a.a.
NCBI ID   WP_044055233.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971555..983984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS04320 (NJ8700_04435) - 971937..973295 (+) 1359 WP_012771552.1 MFS transporter -
  NJ8700_RS04325 (NJ8700_04440) folK 973755..974261 (-) 507 WP_012771553.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NJ8700_RS04330 (NJ8700_04445) pcnB 974254..975519 (-) 1266 WP_012771554.1 polynucleotide adenylyltransferase PcnB -
  NJ8700_RS04335 (NJ8700_04455) dksA 975824..976261 (-) 438 WP_005556693.1 RNA polymerase-binding protein DksA -
  NJ8700_RS04340 (NJ8700_04460) rec2 976555..978984 (+) 2430 WP_044055233.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NJ8700_RS04345 (NJ8700_04465) msbA 979029..980777 (+) 1749 WP_005704171.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  NJ8700_RS04350 (NJ8700_04470) lpxK 980796..981773 (+) 978 WP_012771557.1 tetraacyldisaccharide 4'-kinase -
  NJ8700_RS04355 (NJ8700_04475) - 981870..982049 (+) 180 WP_012771558.1 Trm112 family protein -
  NJ8700_RS04360 (NJ8700_04480) kdsB 982051..982824 (+) 774 WP_012771559.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 91854.68 Da        Isoelectric Point: 9.8687

>NTDB_id=127399 NJ8700_RS04340 WP_044055233.1 976555..978984(+) (rec2) [Aggregatibacter aphrophilus NJ8700]
MNISLDKFAGTLIFSGLTLLFLPDKWLLSWQVALYIFLPLLFITLLCYCLKLTKLLTLLTYLLLFLAQLVYVHFPALSLL
KQADNIANLPKILHTEFTVQEVLNQQDFQTVVITAKLAEDLPEQRIYAQWKAPQIVQIGERYEGDLRLRPISSRLNFNGF
DRQQWYFGKHISAWASVQSAVKIKNVFSWRQTALNNALKQTENLSQQGLLLALGFGERAWLDNETWQIYQKTNTAHLIAI
SGLHIGLAMLLGYGLARLLQFFLPTRYLTPTLPILCGLLFALLYSQLAGMAIPTLRAMVALAILYAIQGLRLYWTPWRLL
WRVLALLILIDPLMLLSTSFWLSVSAVTSLMIWYQFFPLSLLQWRQSSLTHSPWHKVRWIFSLFHLQLGLLWLFTPIQLF
FFNGLSLNSFIANLIAVPIYSFLLVPLVLFAVFTQGTLYSWQAANNLSEKITALLAYGQDGWLTVSLQQSLWLTLLLTIA
FLSALHFVYKAPKPIASPIELAKQSRNKGFHLNPARKLDLGLPIKAYAIGGGLAVFCITSLIYLSISRPHWQLETLDVGQ
GLATLIVKNGKGVLYDTGPSWNGGSMARLEILPYLQREGIKLDWLIISHDDNDHAGGAKDILAAYPTVKFISPSDKIYGE
KNDRKIDRTLCQTGEKWHWQGLSFSVLSPDNIVPRAENKDSCTLLLSDGQHQILLTGDADLGVEYKILPKLGKIDVLQVG
HHGSKTSTGEALVRQTEPKIALISSGRWNPWHFPHKDVVARLRRQNTQIYNTAEHGQIRLLFQDKEIKIQTARTEFSPWY
RRLIGLQTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=127399 NJ8700_RS04340 WP_044055233.1 976555..978984(+) (rec2) [Aggregatibacter aphrophilus NJ8700]
GTGAATATTTCGTTAGATAAATTTGCCGGCACACTAATTTTCAGTGGGCTAACACTATTATTTTTGCCCGATAAATGGCT
TTTATCGTGGCAGGTTGCATTATATATTTTCCTCCCGTTACTATTTATAACGTTACTTTGTTACTGCTTAAAATTAACCA
AGTTGTTAACGCTACTCACCTATTTACTGCTGTTTCTTGCCCAGCTGGTTTATGTGCATTTCCCTGCCCTGTCACTGCTC
AAACAAGCGGACAACATTGCCAATTTGCCAAAAATCCTTCACACCGAATTCACCGTACAAGAAGTGTTGAACCAACAAGA
TTTTCAAACTGTAGTCATTACCGCCAAACTCGCCGAAGACTTACCGGAACAACGTATTTATGCTCAATGGAAAGCGCCGC
AAATCGTGCAAATCGGCGAACGTTATGAGGGCGATTTACGTCTGCGTCCAATATCGTCCCGTTTAAACTTTAACGGCTTC
GACCGCCAACAATGGTATTTCGGCAAACACATTAGCGCATGGGCAAGCGTTCAAAGTGCGGTCAAAATAAAAAACGTTTT
TTCGTGGCGACAAACGGCTCTCAATAACGCCTTAAAACAAACGGAAAATCTATCCCAACAAGGTCTACTATTAGCCCTTG
GTTTTGGCGAACGTGCATGGTTAGACAACGAAACTTGGCAAATTTATCAAAAAACTAATACGGCGCATTTAATCGCCATT
TCCGGCTTGCATATCGGCCTTGCCATGTTGCTAGGATATGGCCTGGCACGCCTATTGCAATTTTTTCTGCCAACCCGCTA
TCTCACGCCGACATTGCCGATACTATGCGGTTTGCTATTTGCCTTGCTTTATAGTCAGTTGGCGGGCATGGCAATTCCCA
CCCTGCGCGCCATGGTTGCCCTCGCTATTCTCTATGCCATTCAAGGCCTAAGGCTATACTGGACGCCTTGGCGTTTATTG
TGGCGGGTGTTGGCATTATTGATTTTGATCGATCCGCTTATGTTGCTTTCTACCAGTTTCTGGCTGTCCGTCAGCGCCGT
CACAAGTTTGATGATTTGGTATCAATTCTTTCCACTATCGCTATTACAATGGCGCCAATCATCCCTTACCCATTCACCAT
GGCACAAAGTGCGGTGGATTTTTTCGCTGTTTCATCTGCAATTGGGACTGTTATGGTTATTTACCCCAATTCAACTTTTC
TTTTTTAACGGACTCTCTTTAAATAGCTTTATAGCCAATTTAATCGCAGTGCCCATATACAGCTTTTTGTTGGTTCCCTT
AGTATTGTTTGCCGTATTCACTCAAGGCACCTTGTATTCATGGCAGGCCGCCAATAATTTATCGGAAAAAATCACCGCAC
TTTTGGCTTATGGGCAAGACGGATGGCTCACGGTTTCACTTCAACAAAGTTTATGGCTAACGCTTTTGCTCACGATTGCA
TTTTTAAGCGCATTACATTTTGTTTATAAAGCCCCGAAACCTATCGCATCCCCCATCGAATTAGCCAAACAATCCCGTAA
TAAAGGATTTCATTTGAACCCCGCGCGTAAACTTGATTTAGGGTTACCAATCAAGGCGTATGCCATCGGCGGCGGATTAG
CGGTATTCTGCATTACTTCATTGATTTACCTTTCAATTTCACGCCCTCATTGGCAATTAGAAACCTTAGATGTAGGGCAA
GGGCTCGCCACATTAATCGTTAAAAATGGCAAAGGTGTACTCTATGACACCGGCCCAAGTTGGAACGGCGGTAGCATGGC
AAGATTAGAAATTTTGCCTTATTTACAGCGGGAAGGTATTAAACTTGATTGGTTGATCATAAGCCATGATGACAACGATC
ACGCCGGCGGAGCAAAAGATATTTTAGCGGCATACCCGACTGTGAAATTCATTAGCCCGTCAGACAAAATCTATGGGGAA
AAAAACGATCGCAAAATCGACCGCACTTTGTGCCAAACCGGTGAGAAATGGCATTGGCAGGGGTTAAGTTTCTCCGTACT
CTCTCCCGATAATATCGTGCCAAGGGCGGAAAATAAGGATTCTTGCACACTATTACTAAGTGATGGACAACATCAAATTT
TACTCACAGGCGATGCGGATCTTGGGGTGGAATATAAGATCTTGCCAAAACTTGGAAAAATTGATGTATTGCAAGTGGGA
CACCATGGCAGTAAAACCTCCACCGGTGAAGCGTTGGTGCGACAAACGGAACCTAAGATCGCGCTGATTTCCAGCGGACG
TTGGAATCCTTGGCATTTTCCCCACAAAGACGTAGTTGCTCGTTTAAGACGACAAAATACACAAATTTATAACACGGCGG
AACACGGACAAATCCGTTTATTGTTTCAGGATAAGGAGATAAAAATTCAAACTGCGCGGACAGAATTTTCGCCGTGGTAT
CGCAGATTAATTGGCTTACAGACGAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-746)

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Competence protein (Competence)

(213-485)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

54.103

96.415

0.522

Multiple sequence alignment