Detailed information    

insolico Bioinformatically predicted

Overview


Name   waaF   Type   Regulator
Locus tag   CR44_RS06845 Genome accession   NZ_CP009226
Coordinates   1398097..1399041 (+) Length   314 a.a.
NCBI ID   WP_039362751.1    Uniprot ID   A0AAX0HDB2
Organism   Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1393097..1404041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR44_RS06825 (CR44_06930) - 1393743..1394798 (-) 1056 WP_023385763.1 glycosyltransferase family 4 protein -
  CR44_RS06830 (CR44_06935) - 1394795..1395715 (-) 921 WP_023385764.1 glycosyltransferase family 9 protein -
  CR44_RS06835 (CR44_06940) - 1395690..1396994 (-) 1305 WP_023385765.1 hypothetical protein -
  CR44_RS06840 (CR44_06945) - 1397082..1398113 (+) 1032 WP_039362748.1 glycosyltransferase family 4 protein -
  CR44_RS06845 (CR44_06950) waaF 1398097..1399041 (+) 945 WP_039362751.1 lipopolysaccharide heptosyltransferase II Regulator
  CR44_RS06850 (CR44_06955) gmhA 1399007..1399570 (-) 564 WP_023385769.1 D-sedoheptulose 7-phosphate isomerase -
  CR44_RS06855 (CR44_06960) rfaE1 1399573..1400949 (-) 1377 WP_023385770.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CR44_RS06860 (CR44_06965) rfaD 1400942..1401910 (-) 969 WP_023385772.1 ADP-glyceromanno-heptose 6-epimerase -
  CR44_RS06865 (CR44_06970) gmhB 1401907..1402413 (-) 507 WP_023385774.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  CR44_RS06870 (CR44_06975) - 1402544..1402858 (+) 315 WP_023385776.1 c-type cytochrome -

Sequence


Protein


Download         Length: 314 a.a.        Molecular weight: 35717.85 Da        Isoelectric Point: 9.3438

>NTDB_id=127379 CR44_RS06845 WP_039362751.1 1398097..1399041(+) (waaF) [Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1]
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFADVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELASFIAGLDMFITNDSGPMHI
AAAFKVPTIALFGPTKFKETSPYKNNNAKILHLDLDCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=127379 CR44_RS06845 WP_039362751.1 1398097..1399041(+) (waaF) [Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1]
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGTAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCAAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAACGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAACTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTATGGAAGC
GCGAAAAGATGGTATCCGCAGTACTTTGCAGATGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGCAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAGCTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGACTGTATGCCCTGTATGAAGAGAGTTTGTCCTTTAAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGTTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.243

99.682

0.481


Multiple sequence alignment