Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC1303_RS05050 Genome accession   NZ_CP009166
Coordinates   1077801..1078430 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli 1303     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072801..1083430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1303_RS05025 (EC1303_c09740) ycbZ 1073202..1074962 (-) 1761 WP_000156518.1 Lon protease family protein -
  EC1303_RS05030 (EC1303_c09750) matP 1075148..1075600 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EC1303_RS05035 (EC1303_c09760) ompA 1075676..1076716 (-) 1041 WP_000750416.1 porin OmpA -
  EC1303_RS05045 (EC1303_c09770) sulA 1077073..1077582 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC1303_RS05050 (EC1303_c09780) sxy/tfoX 1077801..1078430 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC1303_RS05055 (EC1303_c09790) yccS 1078393..1080555 (-) 2163 WP_000875061.1 YccS family putative transporter -
  EC1303_RS05060 (EC1303_c09800) yccF 1080565..1081011 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EC1303_RS05065 (EC1303_c09810) helD 1081134..1083188 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=127211 EC1303_RS05050 WP_000839153.1 1077801..1078430(+) (sxy/tfoX) [Escherichia coli 1303]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=127211 EC1303_RS05050 WP_000839153.1 1077801..1078430(+) (sxy/tfoX) [Escherichia coli 1303]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment