Detailed information NTG0127191

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SG46_RS13910
• Genome accession: NZ_CP011322
• Coordinates: 2852652..2853644 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain SQ110
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2847652..2858644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SG46_RS13890 (SG46_2782)	otnK	2848428..2849594 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
SG46_RS13895 (SG46_2783)	ygbL	2849686..2850324 (+)	639	WP_001278994.1	aldolase	-
SG46_RS13900 (SG46_2784)	ygbM	2850329..2851105 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
SG46_RS13905 (SG46_2785)	ygbN	2851194..2852558 (+)	1365	WP_000104441.1	GntP family transporter	-
SG46_RS13910 (SG46_2786)	rpoS	2852652..2853644 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
SG46_RS13915 (SG46_2787)	nlpD	2853707..2854801 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
SG46_RS13920 (SG46_2788)	pcm	2854986..2855612 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
SG46_RS13925 (SG46_2789)	surE	2855606..2856367 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
SG46_RS13930 (SG46_2790)	truD	2856348..2857397 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
SG46_RS13935 (SG46_2791)	ispF	2857394..2857873 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SG46_RS13940 (SG46_2792)	ispD	2857873..2858583 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=127191 SG46_RS13910 WP_000081588.1 2852652..2853644(-) (rpoS) [Escherichia coli strain SQ110]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=127191 SG46_RS13910 WP_000081588.1 2852652..2853644(-) (rpoS) [Escherichia coli strain SQ110]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715