Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   JH146_RS05680 Genome accession   NZ_CP009149
Coordinates   1117136..1118035 (+) Length   299 a.a.
NCBI ID   WP_048202091.1    Uniprot ID   A0A076LK38
Organism   Methanocaldococcus bathoardescens strain JH146     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112136..1123035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH146_RS08845 - 1113069..1113788 (+) 720 Protein_1136 transcription initiation factor IIB -
  JH146_RS05670 (JH146_1114) - 1113866..1116055 (+) 2190 WP_048202089.1 ATPase, T2SS/T4P/T4SS family -
  JH146_RS05675 (JH146_1115) - 1116094..1117125 (+) 1032 WP_048202090.1 type II secretion system F family protein -
  JH146_RS05680 (JH146_1116) epdJ 1117136..1118035 (+) 900 WP_048202091.1 type II secretion system F family protein Machinery gene
  JH146_RS05685 (JH146_1117) - 1118070..1118579 (-) 510 WP_048202092.1 TIGR00295 family protein -
  JH146_RS05690 (JH146_1118) tfe 1118660..1119217 (-) 558 WP_048202093.1 transcription factor E -
  JH146_RS05695 (JH146_1119) - 1119183..1120280 (-) 1098 WP_173400828.1 ATP-grasp domain-containing protein -
  JH146_RS05700 (JH146_1120) mptA 1120340..1121287 (-) 948 WP_048202094.1 GTP cyclohydrolase MptA -
  JH146_RS05705 (JH146_1121) - 1121271..1122500 (-) 1230 WP_048202095.1 ArsR family transcriptional regulator -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33359.18 Da        Isoelectric Point: 9.9295

>NTDB_id=127078 JH146_RS05680 WP_048202091.1 1117136..1118035(+) (epdJ) [Methanocaldococcus bathoardescens strain JH146]
MKKYLELIYYHTIKKNTIILKKLGRNIDDKKFILFLIFISVLSVIIGYYLNLTLKGIIILTTIYIGAAISLPSILYENKI
EKLENNIPQALYIMILTLESGRSINEALDEVVKSNIKEVSNIFRKVLYLMEKQKISFEESMTVVSNLYDSKVLRMLTRIM
IENRKYGGDLADSLKILAKTLEDFKLYKRQLLSVTAGGLAVGFIILCGVIPAVAGLLGAYLITISNMLSGMTPLPPVKPE
DISRGLEIIQTGTAIIGALFAIPIFGLKIGRMFLISAITMTIGILAYYSILKIAPGFFT

Nucleotide


Download         Length: 900 bp        

>NTDB_id=127078 JH146_RS05680 WP_048202091.1 1117136..1118035(+) (epdJ) [Methanocaldococcus bathoardescens strain JH146]
ATGAAAAAATATCTCGAACTCATATATTATCATACCATTAAGAAAAATACTATAATTTTAAAAAAACTTGGAAGAAATAT
TGATGATAAAAAATTCATATTGTTTCTAATATTTATAAGTGTATTATCCGTTATAATTGGATATTATTTGAATTTAACTC
TAAAGGGAATTATAATTTTAACCACTATATATATTGGAGCAGCAATATCTCTACCTTCAATACTCTACGAAAACAAAATA
GAAAAACTTGAAAATAATATTCCACAAGCCCTCTATATTATGATATTAACTCTTGAATCTGGAAGGTCTATAAATGAGGC
GTTAGATGAGGTTGTAAAAAGCAATATAAAAGAAGTCAGCAATATTTTTAGGAAAGTTCTCTATTTAATGGAAAAACAAA
AAATAAGTTTTGAAGAATCTATGACAGTTGTATCTAATTTATATGATTCTAAAGTTTTAAGGATGTTAACAAGAATTATG
ATTGAGAATAGAAAATATGGAGGAGATTTAGCAGATTCCTTAAAAATTTTAGCTAAGACTCTTGAAGATTTTAAACTGTA
TAAAAGGCAGTTATTGAGTGTTACAGCTGGAGGTTTGGCAGTTGGTTTTATTATATTATGTGGTGTCATCCCAGCTGTCG
CTGGATTGTTGGGAGCTTATCTAATAACCATATCAAATATGCTAAGTGGAATGACCCCACTACCTCCAGTTAAACCAGAA
GACATATCAAGAGGTTTAGAGATTATACAAACAGGGACAGCAATCATAGGGGCTCTATTTGCAATTCCAATATTTGGACT
AAAAATTGGAAGGATGTTCTTAATCTCAGCTATAACTATGACTATTGGTATTTTAGCGTATTACTCAATTCTAAAAATCG
CTCCTGGATTCTTTACTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(93-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A076LK38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

50.168

99.331

0.498

Multiple sequence alignment