Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PLANO_RS07050 Genome accession   NZ_CP009129
Coordinates   1386140..1387837 (+) Length   565 a.a.
NCBI ID   WP_038703755.1    Uniprot ID   A0A0B4RC01
Organism   Planococcus sp. PAMC 21323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1381140..1392837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLANO_RS07025 (Plano_1352) xseB 1381555..1381791 (+) 237 WP_008429975.1 exodeoxyribonuclease VII small subunit -
  PLANO_RS07030 (Plano_1353) - 1381788..1382669 (+) 882 WP_038703752.1 farnesyl diphosphate synthase -
  PLANO_RS07035 (Plano_1354) dxs 1382761..1384665 (+) 1905 WP_038705400.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PLANO_RS07040 (Plano_1355) - 1384662..1385483 (+) 822 WP_038703753.1 TlyA family RNA methyltransferase -
  PLANO_RS07045 (Plano_1356) argR 1385673..1386122 (+) 450 WP_038703754.1 transcriptional regulator ArgR -
  PLANO_RS07050 (Plano_1357) recN 1386140..1387837 (+) 1698 WP_038703755.1 DNA repair protein RecN Machinery gene
  PLANO_RS07055 (Plano_1358) spo0A 1387895..1388665 (+) 771 WP_038703756.1 sporulation transcription factor Spo0A -
  PLANO_RS07060 (Plano_1360) - 1389303..1390037 (+) 735 WP_231554760.1 glycerophosphodiester phosphodiesterase family protein -
  PLANO_RS07065 (Plano_1361) - 1390048..1390281 (-) 234 WP_038705401.1 DUF2627 domain-containing protein -
  PLANO_RS07070 (Plano_1362) - 1390407..1392452 (+) 2046 WP_038703758.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63428.21 Da        Isoelectric Point: 5.0420

>NTDB_id=127028 PLANO_RS07050 WP_038703755.1 1386140..1387837(+) (recN) [Planococcus sp. PAMC 21323]
MLRELDIRNFAIIDSLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLEDEQHPVFRK
LEEFGITKSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLDQFAGKSLAKSK
ESYSHTFDKYMKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVNGEEEELVQERKKLQNFNKIYESISAAHEAIQG
ESKGLDWIGSAMSEIEHAAAVDETFTGASETLSGAFYLIQDTGTEIKRILDDMEFDPGRLNEIEQRLAVIQSLKRKYGSS
VEDILLYHEKQTDELDKLVNRDQRFQLDQEKLKEMTEDLRVEADELTILRKKAAKSLGKAIMEQLKELHMAKASFEVNFA
VLPNARFDRNGHDAITFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVDSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELDGTERTEEMSRMLSGAEITDLTLQHAKELLTLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=127028 PLANO_RS07050 WP_038703755.1 1386140..1387837(+) (recN) [Planococcus sp. PAMC 21323]
ATGCTTCGTGAATTAGATATACGCAATTTTGCCATAATTGATTCTTTAACCGTTAGTTTTTCTGAAGGATTAACGGTCTT
AACAGGAGAAACTGGCGCAGGTAAATCAATTATCATTGATGCTGTCCATCTTTTAGCTGGTGGAAGAGGAAGCCAAGAGT
TTATCCGACATGGTGCAAAAAAGGCTGAAATAGAAGGATTATTTTCTTTGGAAGACGAACAGCATCCAGTGTTCCGCAAA
TTAGAAGAGTTCGGCATCACAAAAAGTGATGGCGACATTTTGTTGCGTAGAGAATTAAACGATAAAGGTAAAAATGTTTG
CCGTATAAATGGTAAACTTGTTACAATATCAATTTTACGCGAAGTGGGTGCATCGTTGATTGATATCCACGGCCAGCACG
AAACGCAGGAATTGATGGACGAAAAACAACATTTGTACTTATTGGACCAATTTGCGGGCAAAAGTTTAGCAAAGTCCAAA
GAAAGTTATAGTCATACATTTGATAAATACATGAAGTTAAAACGCGAGTTTTCATCCTATACTGAAAACGAACAACAAAT
TGCACAGCGAATTGACTTACTGACATTCCAACTGCAAGAAATTGAAGCAGCAGAATTGGTTAACGGAGAAGAAGAAGAAC
TGGTGCAAGAACGAAAAAAATTACAGAATTTCAATAAAATTTACGAATCAATTTCAGCGGCACACGAAGCGATTCAAGGC
GAAAGTAAAGGTTTAGACTGGATCGGTTCTGCCATGTCAGAAATCGAGCATGCCGCGGCAGTAGACGAAACATTTACAGG
AGCATCAGAAACTTTATCGGGCGCTTTTTATTTGATTCAAGACACCGGTACTGAGATAAAACGTATACTTGATGATATGG
AATTTGATCCTGGTCGATTAAATGAAATTGAACAGCGCTTGGCCGTCATTCAATCGTTAAAAAGAAAGTATGGTTCTTCA
GTTGAGGACATCTTGCTTTACCATGAAAAACAGACTGATGAACTGGATAAATTAGTTAACCGTGATCAACGTTTCCAACT
GGATCAAGAAAAGCTAAAAGAAATGACTGAAGACTTGCGTGTTGAAGCGGACGAATTAACGATTTTACGAAAAAAAGCTG
CAAAAAGTTTAGGTAAAGCTATTATGGAACAATTAAAAGAGTTGCATATGGCTAAGGCATCATTTGAAGTTAATTTTGCT
GTTTTACCCAATGCTAGATTTGATCGTAATGGCCATGATGCAATCACGTTCTATATCTCAACGAATCTTGGTGAACCATT
AAAGCCTTTAACTAAAGTAGCATCAGGTGGAGAGTTGTCACGAATGATGTTGGCATTGAAAACCATTTTCTCTAAGCATC
AAGGAATTACGTCGATTATTTTTGATGAAGTGGATACAGGGGTAAGTGGACGTGTGGCACAAGCCATTGCAGAAAAAATT
GCAGCTATTTCAGTTGATTCTCAAGTTTTATGTATTTCTCATTTGCCTCAAGTTGCGGCCATGGCCGATCAGCATTTGTT
TATTGAGAAGAAAGTCGACAAACAACGAACTACTACTGCAGTAACAGAGCTTGACGGAACTGAGCGTACAGAAGAAATGA
GTCGAATGCTGTCAGGAGCTGAAATCACCGACTTAACTTTACAGCACGCTAAAGAGTTGTTAACATTAGCGGCTGATCGT
AAATTATTAATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B4RC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.456

100

0.529

Multiple sequence alignment