Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PLANO_RS00025 Genome accession   NZ_CP009129
Coordinates   4823..6199 (+) Length   458 a.a.
NCBI ID   WP_038701841.1    Uniprot ID   A0A0B4R7Q9
Organism   Planococcus sp. PAMC 21323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..11199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLANO_RS00005 (Plano_0001) - 205..675 (+) 471 WP_038701831.1 CtsR family transcriptional regulator -
  PLANO_RS00010 (Plano_0002) - 688..1221 (+) 534 WP_038701833.1 UvrB/UvrC motif-containing protein -
  PLANO_RS00015 (Plano_0003) - 1211..2302 (+) 1092 WP_038701835.1 protein arginine kinase -
  PLANO_RS00020 (Plano_0004) clpC 2299..4761 (+) 2463 WP_038701838.1 ATP-dependent protease ATP-binding subunit ClpC -
  PLANO_RS00025 (Plano_0005) radA 4823..6199 (+) 1377 WP_038701841.1 DNA repair protein RadA Machinery gene
  PLANO_RS00030 (Plano_0006) - 6293..7372 (+) 1080 WP_038701843.1 PIN/TRAM domain-containing protein -
  PLANO_RS00035 (Plano_0007) ispD 7402..8097 (+) 696 WP_038701845.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PLANO_RS00040 (Plano_0008) ispF 8094..8594 (+) 501 WP_038701847.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PLANO_RS00045 (Plano_0009) gltX 8637..10100 (+) 1464 WP_038701849.1 glutamate--tRNA ligase -
  PLANO_RS00050 (Plano_0010) epsC 10414..11076 (+) 663 WP_038701855.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49906.31 Da        Isoelectric Point: 6.4245

>NTDB_id=127019 PLANO_RS00025 WP_038701841.1 4823..6199(+) (radA) [Planococcus sp. PAMC 21323]
MAKKKTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVQAPKGTRGAFQHSAAVPQKATPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEEVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=127019 PLANO_RS00025 WP_038701841.1 4823..6199(+) (radA) [Planococcus sp. PAMC 21323]
ATGGCTAAGAAAAAAACCAAATTTATTTGTCAGTCGTGTGGCTATGAATCGGCCAGATGGATGGGGAAATGTCCAGGTTG
CGCATCATGGAATACCATGACAGAAGAGGTTGAAGTTCAAGCTCCTAAAGGGACGCGTGGTGCTTTTCAACATAGTGCAG
CTGTTCCACAAAAAGCGACGCCGATTAATGCCATTGAAACACAAGACGAACCACGAGTAGAAACGGAACTAAGTGAATTA
AACCGTGTACTTGGCGGGGGAATTGTGCCAGGGTCACTCGTGCTTATTGGGGGAGACCCAGGTATCGGGAAATCGACATT
GCTGTTACAAGTTTCAGCGATGCTTGCAAATAGTGGAAACCGGGTATTATATATTTCCGGAGAAGAATCAATTCGCCAAA
CAAAATTGCGTGCAGAGCGTTTAGACGCATCGTCATCAGAGTTATTTATTTATGCTGAAACGAACTTAGAGTTAATTCAC
CATACGATAGAAGAGGTAGCACCTGACTTTGTCATTGTCGACTCTATACAAACTGTTCATCACCCGGAAGTAACTTCAGC
ACCAGGTAGTGTGACGCAAGTAAGAGAAAGTACGGCAGAATTAATGCGAATCGCCAAGACAAAAAATATTGCGATTTTCT
TAGTTGGGCACGTAACAAAAGAAGGACAAATTGCAGGGCCTCGAATTTTAGAGCATATGGTAGATACGGTATTGTATTTT
GAGGGCGAACGTCATCACACATACCGCATTTTACGCAGTGTGAAAAACCGGTTTGGTTCTACCAATGAAATCGCCATTTT
TGAGATGCTTCAAGGTGGATTAAAAGAAGTGTTAAATCCATCAGAATTATTTTTACAAGAGCGATCGAGTGGCTCGGCAG
GCTCAACTGTTGTTGCTTCAATGGAAGGAACAAGGCCAATTTTGGTTGAAATTCAAGCCTTAGTCACACCTTCAAGTTTT
AATTATCCAAAACGGATGGCGACAGGAATCGATGTTAACCGCGTTACGCTGTTAATGGCGGTTCTAGAAAAGCGCGTAGG
TATGCTTTTACAAGCGCAAGATGCTTATATCAAAGTAGCGGGTGGTGTGAAGCTTGACGAACCTGCAATTGATTTGGCAG
TGTTAGCAAGCATTGTTTCAAGTTTCCGTGACAAAGCGCCAAATGTTTATGATTGTATTATTGGAGAAGTCGGATTGACT
GGTGAAGTCAGACGCGTATCGCGTATCGAGCAGCGTGTTCAAGAAGCAGCGAAGTTAGGCTTTAAGCGTGCCATTATTCC
GGCATCTAATTTAGGCGGCTGGGATTATCCGGAAGGAATTCGTGTAGTTGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AGATCTTTCCACAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B4R7Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.068

98.908

0.723
  radA Streptococcus pneumoniae Rx1

61.623

99.563

0.614
  radA Streptococcus pneumoniae D39

61.623

99.563

0.614
  radA Streptococcus pneumoniae R6

61.623

99.563

0.614
  radA Streptococcus pneumoniae TIGR4

61.623

99.563

0.614
  radA Streptococcus mitis NCTC 12261

61.623

99.563

0.614
  radA Streptococcus mitis SK321

61.623

99.563

0.614

Multiple sequence alignment