Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   YQ19_RS32355 Genome accession   NZ_CP011317
Coordinates   6835376..6835900 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Carb01 63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6830376..6840900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ19_RS32340 (YQ19_32335) aroB 6831492..6832598 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  YQ19_RS32345 (YQ19_32340) aroK 6832648..6833166 (-) 519 WP_003095833.1 shikimate kinase AroK -
  YQ19_RS32350 (YQ19_32345) pilQ 6833178..6835322 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  YQ19_RS32355 (YQ19_32350) comL/pilP 6835376..6835900 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  YQ19_RS32360 (YQ19_32355) pilO 6835897..6836520 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  YQ19_RS32365 (YQ19_32360) pilN 6836517..6837113 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  YQ19_RS32370 (YQ19_32365) pilM 6837113..6838177 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  YQ19_RS32375 (YQ19_32370) - 6838362..6840830 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=126965 YQ19_RS32355 WP_003095836.1 6835376..6835900(-) (comL/pilP) [Pseudomonas aeruginosa strain Carb01 63]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=126965 YQ19_RS32355 WP_003095836.1 6835376..6835900(-) (comL/pilP) [Pseudomonas aeruginosa strain Carb01 63]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment