Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   YQ19_RS29885 Genome accession   NZ_CP011317
Coordinates   6296516..6299377 (-) Length   953 a.a.
NCBI ID   WP_034000756.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Carb01 63     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6291516..6304377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ19_RS29865 (YQ19_29860) yfdX1 6291741..6292655 (-) 915 WP_025297817.1 heat resistance protein YfdX1 -
  YQ19_RS29870 (YQ19_29865) hsp20-GI 6292678..6293136 (-) 459 WP_001275372.1 small heat shock protein sHSP20-GI -
  YQ19_RS29875 (YQ19_29870) ftsH 6293224..6295041 (-) 1818 WP_025297816.1 ATP-dependent zinc metalloprotease FtsH -
  YQ19_RS29880 (YQ19_29875) cls 6295069..6296499 (-) 1431 WP_034000759.1 cardiolipin synthase -
  YQ19_RS29885 (YQ19_29880) clpC 6296516..6299377 (-) 2862 WP_034000756.1 heat shock survival AAA family ATPase ClpK Regulator
  YQ19_RS29890 (YQ19_29885) - 6299475..6300044 (-) 570 WP_016782887.1 Hsp20/alpha crystallin family protein -
  YQ19_RS29895 (YQ19_29890) - 6300079..6300360 (-) 282 WP_025297683.1 helix-turn-helix domain-containing protein -
  YQ19_RS37365 (YQ19_29895) - 6300584..6300847 (-) 264 WP_025297682.1 hypothetical protein -
  YQ19_RS37370 - 6300862..6301125 (+) 264 WP_001446199.1 transposase -
  YQ19_RS37375 - 6301082..6301234 (+) 153 Protein_6047 transposase domain-containing protein -
  YQ19_RS37380 - 6301525..6301620 (-) 96 Protein_6048 ATP-binding protein -
  YQ19_RS29905 (YQ19_29900) - 6301717..6303339 (-) 1623 WP_025297844.1 Tn7-like element transposition protein TnsE -

Sequence

Protein


Download         Length: 953 a.a.        Molecular weight: 104912.87 Da        Isoelectric Point: 5.6620

>NTDB_id=126960 YQ19_RS29885 WP_034000756.1 6296516..6299377(-) (clpC) [Pseudomonas aeruginosa strain Carb01 63]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDSPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGEKPFEGEVGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGEMILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYMASRKQYDKAAELGKRIEAKEAELKK
LIEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGD
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHAVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKAGGAAGEEYEKTKSEVMDVLRGHFR
PEFINRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHANARWDDKAERVVFERQEPPAKSAEPEKPDAADVAEAPPGDASKPARKPARKKKSADGES

Nucleotide


Download         Length: 2862 bp        

>NTDB_id=126960 YQ19_RS29885 WP_034000756.1 6296516..6299377(-) (clpC) [Pseudomonas aeruginosa strain Carb01 63]
ATGGCCAGAAAACAATGCCAGGTCTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAAGCCTTGTTTG
GCTCGCGCAGCGGCTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATTCGCCGTCCATGGCGGCC
GATACCGACGAGGTGGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCTGGTACGGGCACCGCGCGCCGTCGCGGCAGCGG
GCTCGCCAGCCGCATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGATGTGGTGAAGACCATCCTGGGACAGTTCAAGATCAAG
GTCGATGACCTCAAGCGACAGATCGAATCCGAAGCCAAGCGCGGCGAGAAGCCGTTCGAGGGCGAAGTCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGCGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCTGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCCGAGCTGGATAA
ATACTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGTGCGCAGGAGATCGAGACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAAAACAACCCGGTGTTGATCGGTGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGACTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGTCTGGTCGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAGTATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGATGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCACTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACTGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTTGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCTCGCCCAGTGGCGGTGCAGGAGCTGGAGTCCGAACTGCACCAGTTGCGGCGTGAGCAGGACT
ATATGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCAAAAGAGGCCGAACTCAAGAAG
CTCATCGAAGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCGAC
AAGCCGGTGGCGACTTTCCTGTTCCTTGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATGCCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACCTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCGGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCATCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTTGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGGTGATCACGCCAACGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGTCGGCTGAGCCTGAAAAGCCCGATGCCGCGGACGTGGCCGAGGCACCGCCTGGCG
ACGCGAGCAAGCCTGCGCGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGACGGCGAATCTTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(307-440)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(816-894)

AAA lid domain (AAA_lid_9)

(449-547)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(123-171)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(199-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(641-810)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

50.822

83.001

0.422
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.276

85.834

0.371
  clpC Streptococcus thermophilus LMD-9

41.889

86.674

0.363
  clpC Streptococcus mutans UA159

42.279

85.624

0.362
  clpC Streptococcus thermophilus LMG 18311

41.798

86.359

0.361

Multiple sequence alignment