Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SPS5912_RS03735 Genome accession   NZ_CP009120
Coordinates   842866..843582 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain 5912     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 837866..848582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPS5912_RS03715 (SPS5912_03735) - 838054..839139 (-) 1086 WP_101457307.1 YeeE/YedE family protein -
  SPS5912_RS03720 (SPS5912_03740) - 839371..840318 (+) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -
  SPS5912_RS03725 (SPS5912_03745) - 840374..841858 (+) 1485 WP_100007030.1 sucrose-6-phosphate hydrolase -
  SPS5912_RS03730 (SPS5912_03750) - 841862..842806 (+) 945 WP_148124096.1 carbohydrate kinase -
  SPS5912_RS03735 (SPS5912_03755) agrA 842866..843582 (-) 717 WP_014613411.1 LytTR family DNA-binding domain-containing protein Regulator
  SPS5912_RS12195 - 843596..844390 (-) 795 WP_241536920.1 ATP-binding protein -
  SPS5912_RS03745 (SPS5912_03765) - 844911..845048 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide -
  SPS5912_RS03750 (SPS5912_03770) - 845050..845616 (-) 567 WP_096636794.1 accessory gene regulator AgrB -
  SPS5912_RS03755 (SPS5912_03775) - 846379..847698 (+) 1320 WP_015729817.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=126938 SPS5912_RS03735 WP_014613411.1 842866..843582(-) (agrA) [Staphylococcus pseudintermedius strain 5912]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=126938 SPS5912_RS03735 WP_014613411.1 842866..843582(-) (agrA) [Staphylococcus pseudintermedius strain 5912]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTATCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832

Multiple sequence alignment