Detailed information NTG0126895

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: YQ19_RS08780
• Genome accession: NZ_CP011317
• Coordinates: 1811759..1812763 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Carb01 63
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1806759..1817763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YQ19_RS08750 (YQ19_08750)	fghA	1806851..1807702 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
YQ19_RS08755 (YQ19_08755)	ispF	1807773..1808246 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
YQ19_RS08760 (YQ19_08760)	truD	1808243..1809310 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
YQ19_RS08765 (YQ19_08765)	surE	1809298..1810047 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
YQ19_RS08770 (YQ19_08770)	-	1810080..1810715 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
YQ19_RS08775 (YQ19_08775)	-	1810761..1811654 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
YQ19_RS08780 (YQ19_08780)	rpoS	1811759..1812763 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
YQ19_RS08785 (YQ19_08785)	fdxA	1813190..1813513 (-)	324	WP_003092272.1	ferredoxin FdxA	-
YQ19_RS08790 (YQ19_08790)	mutS	1813580..1816147 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
YQ19_RS08795 (YQ19_08795)	-	1816273..1817280 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=126895 YQ19_RS08780 WP_003113871.1 1811759..1812763(+) (rpoS) [Pseudomonas aeruginosa strain Carb01 63]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=126895 YQ19_RS08780 WP_003113871.1 1811759..1812763(+) (rpoS) [Pseudomonas aeruginosa strain Carb01 63]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653