Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ID12_RS15710 Genome accession   NZ_CP009108
Coordinates   3126195..3127928 (-) Length   577 a.a.
NCBI ID   WP_035390783.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3121195..3132928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS15695 (ID12_16335) - 3122082..3123182 (-) 1101 WP_017367574.1 Rap family tetratricopeptide repeat protein -
  ID12_RS15700 (ID12_16340) spo0A 3123632..3124435 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  ID12_RS15705 (ID12_16345) spoIVB 3124719..3125996 (-) 1278 WP_050827393.1 SpoIVB peptidase -
  ID12_RS15710 (ID12_16350) recN 3126195..3127928 (-) 1734 WP_035390783.1 DNA repair protein RecN Machinery gene
  ID12_RS15715 (ID12_16355) ahrC 3127963..3128412 (-) 450 WP_007501163.1 transcriptional regulator AhrC/ArgR -
  ID12_RS15720 (ID12_16360) - 3128574..3129428 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  ID12_RS15725 (ID12_16365) dxs 3129425..3131326 (-) 1902 WP_048003502.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ID12_RS15730 (ID12_16370) - 3131478..3132374 (-) 897 WP_206761467.1 polyprenyl synthetase family protein -
  ID12_RS15735 (ID12_16375) - 3132358..3132618 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64571.46 Da        Isoelectric Point: 4.7444

>NTDB_id=126879 ID12_RS15710 WP_035390783.1 3126195..3127928(-) (recN) [Bacillus altitudinis strain GR-8]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFSI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=126879 ID12_RS15710 WP_035390783.1 3126195..3127928(-) (recN) [Bacillus altitudinis strain GR-8]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGTGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCTCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAAGATGAAAATCATTTACATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCACTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTCTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGACTAAATGAGATGAAGCAGCTGAAGCGAAAATACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTTCGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAACGGCATAGATCA
AGCGCAATTTGTCATTTCAACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGC
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTCGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGCAGAACAATGACGAACG
TCAAACCACTCAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment