Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ID12_RS14775 Genome accession   NZ_CP009108
Coordinates   2952173..2952808 (+) Length   211 a.a.
NCBI ID   WP_050827323.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2947173..2957808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS14735 (ID12_15340) - 2947337..2948455 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  ID12_RS14740 (ID12_15345) - 2948505..2949011 (-) 507 WP_047945923.1 PTS sugar transporter subunit IIA -
  ID12_RS14745 (ID12_15350) - 2949180..2949599 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  ID12_RS14750 (ID12_15355) - 2949621..2950073 (-) 453 WP_017359729.1 YppG family protein -
  ID12_RS14755 (ID12_15360) - 2950182..2950562 (-) 381 WP_225310452.1 YppE family protein -
  ID12_RS14760 (ID12_15365) - 2950612..2950845 (-) 234 WP_234717153.1 DUF5446 family protein -
  ID12_RS14765 (ID12_15370) sspM 2951042..2951146 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  ID12_RS14770 (ID12_15375) - 2951170..2952126 (-) 957 WP_050827322.1 DUF2515 domain-containing protein -
  ID12_RS14775 (ID12_15380) recU 2952173..2952808 (+) 636 WP_050827323.1 Holliday junction resolvase RecU Machinery gene
  ID12_RS14780 (ID12_15385) - 2952828..2955515 (+) 2688 WP_050827324.1 PBP1A family penicillin-binding protein -
  ID12_RS14785 (ID12_15390) - 2955551..2956060 (-) 510 WP_050827325.1 YpoC family protein -
  ID12_RS14790 (ID12_15395) nth 2956057..2956719 (-) 663 WP_050827327.1 endonuclease III -
  ID12_RS14795 (ID12_15400) - 2956737..2957441 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24337.64 Da        Isoelectric Point: 9.6582

>NTDB_id=126877 ID12_RS14775 WP_050827323.1 2952173..2952808(+) (recU) [Bacillus altitudinis strain GR-8]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=126877 ID12_RS14775 WP_050827323.1 2952173..2952808(+) (recU) [Bacillus altitudinis strain GR-8]
ATGATTCGGTATCCTAATGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment