Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ID12_RS13395 Genome accession   NZ_CP009108
Coordinates   2672513..2672893 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2667513..2677893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS13385 (ID12_13925) - 2669237..2670145 (+) 909 WP_048002685.1 trypsin-like serine peptidase -
  ID12_RS13390 (ID12_13930) - 2670291..2672285 (+) 1995 WP_050827296.1 glycosyltransferase family 39 protein -
  ID12_RS13395 (ID12_13935) nucA/comI 2672513..2672893 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ID12_RS13400 (ID12_13940) - 2673037..2673885 (+) 849 WP_017367323.1 STAS domain-containing protein -
  ID12_RS13405 (ID12_13945) - 2673918..2674460 (-) 543 WP_017367324.1 IseA DL-endopeptidase inhibitor family protein -
  ID12_RS13410 (ID12_13950) - 2674757..2675200 (+) 444 WP_008343821.1 hypothetical protein -
  ID12_RS13415 (ID12_13955) lexA 2675248..2675868 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  ID12_RS13420 (ID12_13960) yneA 2676028..2676339 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  ID12_RS13425 (ID12_13965) - 2676357..2677004 (+) 648 WP_025207396.1 YneB family resolvase-like protein -
  ID12_RS13430 (ID12_13970) - 2677074..2677304 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=126876 ID12_RS13395 WP_224559893.1 2672513..2672893(+) (nucA/comI) [Bacillus altitudinis strain GR-8]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=126876 ID12_RS13395 WP_224559893.1 2672513..2672893(+) (nucA/comI) [Bacillus altitudinis strain GR-8]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment