Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ID12_RS11695 Genome accession   NZ_CP009108
Coordinates   2323491..2323769 (+) Length   92 a.a.
NCBI ID   WP_050827227.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2318491..2328769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS11680 (ID12_12160) - 2318716..2320128 (+) 1413 WP_234717146.1 RES domain-containing protein -
  ID12_RS11685 (ID12_12165) - 2320663..2321895 (-) 1233 WP_050827226.1 aminopeptidase -
  ID12_RS19380 - 2322001..2322132 (-) 132 WP_003210922.1 protein YkpC -
  ID12_RS11690 (ID12_12175) mreBH 2322207..2323214 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  ID12_RS11695 (ID12_12180) abrB 2323491..2323769 (+) 279 WP_050827227.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ID12_RS11700 (ID12_12185) - 2323914..2325203 (+) 1290 WP_007498613.1 ATP-binding protein -
  ID12_RS11705 (ID12_12190) - 2325231..2326073 (+) 843 WP_050827228.1 gamma-glutamylcyclotransferase -
  ID12_RS11710 (ID12_12195) - 2326111..2326779 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10334.02 Da        Isoelectric Point: 4.5332

>NTDB_id=126871 ID12_RS11695 WP_050827227.1 2323491..2323769(+) (abrB) [Bacillus altitudinis strain GR-8]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEVLQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=126871 ID12_RS11695 WP_050827227.1 2323491..2323769(+) (abrB) [Bacillus altitudinis strain GR-8]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGTCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment