Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   WV34_RS19125 Genome accession   NZ_CP011252
Coordinates   3758870..3759559 (-) Length   229 a.a.
NCBI ID   WP_088613727.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753870..3764559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS19105 (WV34_18635) - 3754774..3755121 (-) 348 WP_088613724.1 YxeA family protein -
  WV34_RS19110 (WV34_18640) yxdM 3755135..3757003 (-) 1869 WP_088613725.1 ABC transporter permease YxdM -
  WV34_RS19115 (WV34_18645) yxdL 3756978..3757751 (-) 774 WP_071347322.1 ABC transporter ATP-binding protein YxdL -
  WV34_RS19120 (WV34_18650) yxdK 3757896..3758873 (-) 978 WP_088613726.1 two-component system sensor histidine kinase YxdK -
  WV34_RS19125 (WV34_18655) braR 3758870..3759559 (-) 690 WP_088613727.1 two-component system response regulator YxdJ Regulator
  WV34_RS19130 (WV34_18660) fba 3759667..3760539 (-) 873 WP_088613728.1 class II fructose-1,6-bisphosphate aldolase -
  WV34_RS19135 (WV34_18665) iolI 3760542..3761384 (-) 843 WP_071347318.1 2-keto-myo-inositol isomerase -
  WV34_RS19140 (WV34_18670) - 3761471..3762340 (-) 870 WP_088613729.1 sugar phosphate isomerase/epimerase -
  WV34_RS19145 (WV34_18675) - 3762360..3763394 (-) 1035 WP_088613730.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26585.37 Da        Isoelectric Point: 4.8564

>NTDB_id=126866 WV34_RS19125 WP_088613727.1 3758870..3759559(-) (braR) [Bacillus amyloliquefaciens strain MT45]
MNKIMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTIPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=126866 WV34_RS19125 WP_088613727.1 3758870..3759559(-) (braR) [Bacillus amyloliquefaciens strain MT45]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCGGAATTATCTTGAAAAATACGGATATCA
AACCGTGGCGGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTACAGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCCTATGACGGCTATTATTGGTGCCGCCAGATCCGTCAGCACTCCACAATTCCGATCATTTTTATTTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGAGGAGATGATTATATCGAAAAACCGTTTTCCTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGCGAGAAAGTGCTTGAAT
ATGCGGGTGTGCAGCTCTTTGTGGAGCGATTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTAT
CAATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397