Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ID12_RS06790 Genome accession   NZ_CP009108
Coordinates   1324792..1325220 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain GR-8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1319792..1330220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS06760 (ID12_06975) - 1319935..1320264 (+) 330 WP_017366586.1 YckD family protein -
  ID12_RS06765 (ID12_06980) - 1320311..1321075 (-) 765 WP_050826926.1 MBL fold metallo-hydrolase -
  ID12_RS06770 (ID12_06985) - 1321192..1321611 (+) 420 WP_026050043.1 Lrp/AsnC family transcriptional regulator -
  ID12_RS06775 (ID12_06990) - 1321636..1322442 (+) 807 WP_050826927.1 aminoglycoside N(3)-acetyltransferase -
  ID12_RS06780 (ID12_06995) comJ 1322444..1322830 (-) 387 WP_050826928.1 competence protein ComJ -
  ID12_RS06785 (ID12_07000) - 1322968..1324665 (-) 1698 WP_048002413.1 methyl-accepting chemotaxis protein -
  ID12_RS06790 (ID12_07005) nucA/comI 1324792..1325220 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ID12_RS06800 (ID12_07015) - 1325587..1327656 (+) 2070 WP_050826929.1 hydantoinase/oxoprolinase family protein -
  ID12_RS06805 (ID12_07020) - 1327646..1329631 (+) 1986 WP_050826930.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=126851 ID12_RS06790 WP_007498233.1 1324792..1325220(-) (nucA/comI) [Bacillus altitudinis strain GR-8]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=126851 ID12_RS06790 WP_007498233.1 1324792..1325220(-) (nucA/comI) [Bacillus altitudinis strain GR-8]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment