Detailed information NTG0126850

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ID12_RS05420
• Genome accession: NZ_CP009108
• Coordinates: 1074816..1076195 (+)
• Length: 459 a.a.
• NCBI ID: WP_017359160.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain GR-8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1069816..1081195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID12_RS05400 (ID12_05590)	-	1070158..1070622 (+)	465	WP_003217184.1	CtsR family transcriptional regulator	-
ID12_RS05405 (ID12_05595)	-	1070637..1071194 (+)	558	WP_007496258.1	UvrB/UvrC motif-containing protein	-
ID12_RS05410 (ID12_05600)	-	1071199..1072290 (+)	1092	WP_017366451.1	protein arginine kinase	-
ID12_RS05415 (ID12_05605)	clpC	1072287..1074722 (+)	2436	WP_007496263.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
ID12_RS05420 (ID12_05610)	radA	1074816..1076195 (+)	1380	WP_017359160.1	DNA repair protein RadA	Machinery gene
ID12_RS05425 (ID12_05615)	disA	1076198..1077277 (+)	1080	WP_007496267.1	DNA integrity scanning diadenylate cyclase DisA	-
ID12_RS05430 (ID12_05620)	-	1077431..1078531 (+)	1101	WP_003217214.1	PIN/TRAM domain-containing protein	-
ID12_RS05435 (ID12_05625)	ispD	1078545..1079234 (+)	690	WP_008345432.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ID12_RS05440 (ID12_05630)	ispF	1079238..1079714 (+)	477	WP_007496273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49995.41 Da
• Isoelectric Point: 7.1218

>NTDB_id=126850 ID12_RS05420 WP_017359160.1 1074816..1076195(+) (radA) [Bacillus altitudinis strain GR-8]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide

• Length: 1380 bp

>NTDB_id=126850 ID12_RS05420 WP_017359160.1 1074816..1076195(+) (radA) [Bacillus altitudinis strain GR-8]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCTGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCTGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTATACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGGGCGGACCGTCTCGGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTCGATTCAATTCAAACCGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACTGCGCAGCTGATGAAAATTGCCAAGACGAATGGTATTCCTATTTTTA
TTGTTGGTCATGTGACGAAGGAAGGCTCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTGGATACAGTTCTTTATTTT
GAAGGGGAGCGCCATCATACGTTTCGTATTTTACGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGGATTTT
TGAAATGAGGGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCGACGAGCTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTGCTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGTGGTGTGAAACTTGACGAACCAGCGATTGATTTGGCTA
TTGCCGTCAGCATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAACGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAATTAGTCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (365-430)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	87.118	99.782	0.869
radA	Streptococcus mitis NCTC 12261	61.81	98.693	0.61
radA	Streptococcus pneumoniae Rx1	61.81	98.693	0.61
radA	Streptococcus pneumoniae D39	61.81	98.693	0.61
radA	Streptococcus pneumoniae R6	61.81	98.693	0.61
radA	Streptococcus pneumoniae TIGR4	61.81	98.693	0.61
radA	Streptococcus mitis SK321	61.81	98.693	0.61