Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   WV34_RS16175 Genome accession   NZ_CP011252
Coordinates   3174271..3176586 (-) Length   771 a.a.
NCBI ID   WP_088613451.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3169271..3181586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS16165 (WV34_15755) cysI 3170545..3172260 (-) 1716 WP_088613449.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  WV34_RS16170 (WV34_15760) - 3172288..3174096 (-) 1809 WP_088613450.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  WV34_RS16175 (WV34_15765) helD 3174271..3176586 (-) 2316 WP_088613451.1 RNA polymerase recycling motor HelD Machinery gene
  WV34_RS16180 (WV34_15770) - 3176755..3177363 (-) 609 WP_014472264.1 trimeric intracellular cation channel family protein -
  WV34_RS16185 (WV34_15775) - 3177586..3178386 (+) 801 WP_088613452.1 zinc-dependent metalloprotease -
  WV34_RS16190 (WV34_15780) - 3178420..3178839 (-) 420 WP_014471015.1 disulfide oxidoreductase -
  WV34_RS16195 (WV34_15785) - 3178829..3179500 (-) 672 WP_088613453.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88345.48 Da        Isoelectric Point: 6.2479

>NTDB_id=126850 WV34_RS16175 WP_088613451.1 3174271..3176586(-) (helD) [Bacillus amyloliquefaciens strain MT45]
MAKRDEEWKEEQGRINFVMKELDQKETRLEASSGGLKQDIVGLRKTFWDDVTVNLDDAHEVAETFSSIKQQAEMLSERER
SHRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSEHSGRHMKNIVSTIQKEQNEIIRDEKSKFLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYEQLEYCLTE
QNQEALSVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWESYETPDQWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGGDIEPFNRNGEKPRVL
RADTEKARQEQLTETIRELRQKGWETIAVICKTAAEAKKVFQAVSVASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYKSQHDRKLLYTACTRAMHHLTVLSPGESSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=126850 WV34_RS16175 WP_088613451.1 3174271..3176586(-) (helD) [Bacillus amyloliquefaciens strain MT45]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGGATCAGAAAGAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTCTGGGATGATGTCACCGTTA
ATTTGGATGACGCCCATGAAGTGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAGCGTGAACGG
TCGCACCGGCTTCAATATCGGCAGCTCCAAAAAATCCAAAAGCTGAAAGCCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTAATGGACGAAAACAATGAGCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGAAGAA
ACCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGAACATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATAC
AAAAAGAACAGAATGAAATCATCCGGGATGAAAAAAGCAAATTTCTCATCGTTCAGGGAGCCGCAGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTATTTGCTGTACCGAGGGCGCGGTGTGCTTGATGCCCGTCAGATTGTGCTGTTTTC
TCCGAACATTTTGTTCAACAGTTACGTTTCTGCCGTATTGCCGGAACTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGGCGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGAAGCGCTTTCCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTTCAGGAGAGTGAGCTGCTCGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGCGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGAATCCTATGAAACGCCTGATCAATGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCTTATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AGCATCTTCCCAGCCGCGAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATCACAGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAATGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACAAAAGCGCTGCTCGATGATGGCGGTGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCTCGTGTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGCAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAACTGCCGCAGAAGCAAAAAAAGTATTTCAGGCGGTCAGCGTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTCGCTGACGCCTCTGTTACCCAGTACAAAAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTCTCCCGGAGAATCTTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.494

99.87

0.664

Multiple sequence alignment