Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | ID12_RS05085 | Genome accession | NZ_CP009108 |
| Coordinates | 1012644..1012934 (-) | Length | 96 a.a. |
| NCBI ID | WP_087975202.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain GR-8 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1007644..1017934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ID12_RS05045 (ID12_05230) | - | 1007677..1008006 (+) | 330 | WP_012008640.1 | cyclic-di-AMP receptor | - |
| ID12_RS05050 (ID12_05235) | - | 1008019..1008459 (+) | 441 | WP_035391564.1 | YaaR family protein | - |
| ID12_RS05055 (ID12_05240) | holB | 1008471..1009460 (+) | 990 | WP_007496231.1 | DNA polymerase III subunit delta' | - |
| ID12_RS05060 (ID12_05245) | - | 1009463..1010290 (+) | 828 | WP_007496230.1 | PSP1 domain-containing protein | - |
| ID12_RS05065 (ID12_05250) | yabA | 1010305..1010658 (+) | 354 | WP_007496228.1 | DNA replication initiation control protein YabA | - |
| ID12_RS05070 (ID12_05255) | - | 1010714..1011457 (+) | 744 | WP_039962495.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| ID12_RS05075 (ID12_05260) | - | 1011444..1011743 (+) | 300 | WP_019744059.1 | GIY-YIG nuclease family protein | - |
| ID12_RS05080 (ID12_05265) | rsmI | 1011718..1012599 (+) | 882 | WP_008341890.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| ID12_RS05085 (ID12_05270) | abrB | 1012644..1012934 (-) | 291 | WP_087975202.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| ID12_RS05090 (ID12_05275) | metG | 1013454..1015454 (+) | 2001 | WP_008341884.1 | methionine--tRNA ligase | - |
| ID12_RS05095 (ID12_05280) | - | 1015536..1016303 (+) | 768 | WP_050826832.1 | TatD family hydrolase | - |
| ID12_RS05100 (ID12_05285) | - | 1016548..1017750 (+) | 1203 | WP_017359324.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10853.65 Da Isoelectric Point: 7.9655
>NTDB_id=126848 ID12_RS05085 WP_087975202.1 1012644..1012934(-) (abrB) [Bacillus altitudinis strain GR-8]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=126848 ID12_RS05085 WP_087975202.1 1012644..1012934(-) (abrB) [Bacillus altitudinis strain GR-8]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |