Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ID12_RS04855 Genome accession   NZ_CP009108
Coordinates   968619..969731 (+) Length   370 a.a.
NCBI ID   WP_035390152.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 963619..974731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS04835 (ID12_05010) rnpA 964370..964729 (-) 360 WP_008347592.1 ribonuclease P protein component -
  ID12_RS18770 rpmH 964808..964942 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  ID12_RS04840 (ID12_05020) dnaA 965563..966903 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  ID12_RS04845 (ID12_05025) dnaN 967100..968236 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  ID12_RS04850 (ID12_05030) yaaA 968387..968602 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  ID12_RS04855 (ID12_05035) recF 968619..969731 (+) 1113 WP_035390152.1 DNA replication/repair protein RecF Machinery gene
  ID12_RS04860 (ID12_05040) remB 969749..969994 (+) 246 WP_008360920.1 extracellular matrix regulator RemB -
  ID12_RS04865 (ID12_05045) gyrB 970052..971968 (+) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ID12_RS04870 (ID12_05050) gyrA 972202..974715 (+) 2514 WP_050826821.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42601.67 Da        Isoelectric Point: 7.1297

>NTDB_id=126846 ID12_RS04855 WP_035390152.1 968619..969731(+) (recF) [Bacillus altitudinis strain GR-8]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLNLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=126846 ID12_RS04855 WP_035390152.1 968619..969731(+) (recF) [Bacillus altitudinis strain GR-8]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAACCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAACTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment