Detailed information    

experimental Experimentally validated

Overview

Name   lpp3030   Type   Unclear
Locus tag   GCO85_RS14915 Genome accession   NZ_CP048618
Coordinates   3352353..3353945 (-) Length   530 a.a.
NCBI ID   WP_061636813.1    Uniprot ID   -
Organism   Legionella pneumophila strain ERS1305867     
Function   require for natural transformation   
Unclear

Function

Participate in natural transformation with unknown function.


Genomic Context

Location: 3347353..3358945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCO85_RS14890 (GCO85_14905) - 3347731..3348447 (+) 717 WP_061636819.1 methyltransferase -
  GCO85_RS14895 (GCO85_14910) - 3348700..3349011 (+) 312 WP_027265600.1 integration host factor subunit beta -
  GCO85_RS14900 (GCO85_14915) dcd 3349027..3349593 (-) 567 WP_010948641.1 dCTP deaminase -
  GCO85_RS14905 (GCO85_14920) - 3349832..3350587 (-) 756 WP_061636817.1 slipin family protein -
  GCO85_RS14910 (GCO85_14925) - 3350631..3352136 (-) 1506 WP_061636815.1 nodulation protein NfeD -
  GCO85_RS14915 (GCO85_14930) lpp3030 3352353..3353945 (-) 1593 WP_061636813.1 LbtU family siderophore porin Unclear
  GCO85_RS14920 (GCO85_14935) - 3354241..3355212 (-) 972 WP_013102059.1 Lpg1974 family pore-forming outer membrane protein -
  GCO85_RS14925 (GCO85_14940) - 3355285..3356154 (-) 870 WP_042755280.1 Lpg1974 family pore-forming outer membrane protein -
  GCO85_RS14930 (GCO85_14945) - 3356320..3357189 (-) 870 WP_014844992.1 Lpg1974 family pore-forming outer membrane protein -
  GCO85_RS14935 (GCO85_14950) - 3357501..3358385 (-) 885 WP_061636809.1 OmpA family protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57358.36 Da        Isoelectric Point: 8.4887

>NTDB_id=1268 GCO85_RS14915 WP_061636813.1 3352353..3353945(-) (lpp3030) [Legionella pneumophila strain ERS1305867]
MKFKKIILALACLSSPLYADQDQQLKSEIQRLQHQAEDLQAQLNRLQKQLANHKSSQQKHEQQAAAKPAEPKSKPTAKSG
AAIEEKYHSSKVEVHAPDAHPESISFYPTALIADNRVVTYIAGTPVVSSPFLGDRPAFDGSDYIVNISSINRDVRLLQQR
RRLYRAYQKIGYPIPNMPIISLSGKTEPAATFNNPFRSTNTDGDITLGSSELDVAAALNENVEAYIAIAYDESPPAIGPR
VNNSAFNLNMGFVNIGNLDKSPLYFTAGQVYVPFGRYSSAMVSAPVTMNLARTKTRPVIFGYKSQGDTGPFGAVYGYRSD
TTLGRSGVGGVNLGYIFGFDNDINGEIGGGFISSVADAGGMQSTGSNVGTTFGGFGSITNGNENVRKTKAADVHGHVGYD
RYNLTLEWVGAVQSFRPQDLSFNGQGARPQAAQAELGMTFMAFNRPASIGVGYQWTKEALALNLPKQRYIGVFNISIWKD
TVESIEYRHDIDYGLTQFANGAAPPGFVNLPTLGTGKSADTVSAQIGVYF

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1268 GCO85_RS14915 WP_061636813.1 3352353..3353945(-) (lpp3030) [Legionella pneumophila strain ERS1305867]
ATGAAGTTTAAAAAAATTATTTTGGCTCTCGCTTGTTTATCATCGCCATTATATGCGGATCAAGATCAACAACTGAAAAG
TGAAATTCAACGATTACAGCATCAAGCAGAAGATTTACAAGCCCAACTCAACCGATTACAAAAACAATTGGCAAATCATA
AAAGCTCTCAGCAAAAGCACGAGCAACAGGCTGCCGCAAAGCCTGCAGAACCAAAGAGTAAGCCGACGGCTAAATCAGGG
GCTGCAATAGAAGAAAAATATCACTCATCCAAAGTCGAAGTCCATGCGCCTGATGCCCATCCAGAGTCAATAAGCTTTTA
TCCAACAGCATTGATAGCCGATAACCGAGTGGTTACTTATATAGCAGGAACTCCTGTAGTAAGCTCGCCATTCCTCGGAG
ACCGGCCTGCTTTTGATGGTTCTGATTATATAGTAAACATTTCCAGTATTAATAGGGATGTTCGTTTATTGCAGCAGCGA
CGACGCTTATACAGAGCCTACCAAAAAATAGGCTATCCTATCCCTAATATGCCAATTATTTCATTAAGTGGCAAAACAGA
ACCTGCTGCTACATTTAACAATCCATTTCGATCAACTAATACGGATGGTGATATTACGCTAGGCTCAAGTGAACTGGACG
TTGCTGCTGCATTGAATGAAAATGTCGAAGCTTATATTGCAATTGCCTATGATGAAAGCCCTCCTGCAATTGGCCCGCGG
GTTAATAACTCAGCATTTAATTTGAATATGGGATTTGTCAACATTGGTAACTTGGATAAAAGCCCGCTTTATTTTACTGC
AGGGCAAGTCTATGTTCCATTCGGCCGTTATTCCAGCGCAATGGTTAGTGCGCCTGTCACAATGAATTTGGCAAGAACCA
AGACAAGGCCTGTCATTTTCGGTTATAAGTCTCAGGGTGATACCGGTCCTTTCGGTGCTGTTTATGGCTACAGAAGCGAT
ACTACATTAGGTCGCTCAGGAGTCGGTGGCGTTAATCTGGGATATATTTTCGGGTTTGATAATGACATCAATGGCGAGAT
AGGGGGCGGCTTTATTAGCTCCGTTGCTGATGCAGGCGGTATGCAAAGTACCGGATCGAATGTGGGGACAACATTTGGCG
GTTTTGGCTCCATAACTAACGGTAATGAAAACGTTCGTAAAACAAAAGCTGCTGACGTTCATGGCCACGTGGGTTATGAT
CGTTATAATCTGACTTTGGAATGGGTTGGTGCCGTACAGAGTTTTAGACCCCAAGACTTGAGTTTTAATGGCCAAGGCGC
CAGACCTCAGGCTGCGCAAGCAGAACTGGGTATGACTTTTATGGCTTTCAACAGACCGGCTTCCATAGGAGTTGGTTATC
AGTGGACAAAAGAAGCATTAGCACTAAATCTGCCGAAACAACGTTATATTGGAGTATTTAACATTTCCATTTGGAAGGAT
ACGGTGGAGAGTATTGAGTACAGGCACGATATTGATTATGGACTTACTCAGTTTGCTAATGGTGCAGCTCCTCCAGGATT
CGTCAACCTTCCAACTTTAGGTACAGGAAAATCTGCCGACACTGTTTCTGCACAAATTGGTGTTTATTTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp3030 Legionella pneumophila str. Paris

98.302

100

0.983

Multiple sequence alignment    



References

[1] Léo Hardy et al. (2021) Transposon Insertion Sequencing in a Clinical Isolate of Legionella pneumophila Identifies Essential Genes and Determinants of Natural Transformation. Journal of Bacteriology 203(3):e00548-20. [PMID: 33168636]