Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WV34_RS06850 Genome accession   NZ_CP011252
Coordinates   1293182..1294318 (+) Length   378 a.a.
NCBI ID   WP_088030497.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288182..1299318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS06820 (WV34_06690) - 1288804..1289475 (+) 672 WP_088612636.1 response regulator transcription factor -
  WV34_RS06825 (WV34_06695) - 1289472..1290824 (+) 1353 WP_088612637.1 HAMP domain-containing sensor histidine kinase -
  WV34_RS06830 (WV34_06700) - 1290951..1291142 (+) 192 WP_235608413.1 ATP-binding cassette domain-containing protein -
  WV34_RS06835 (WV34_06705) - 1291244..1291435 (+) 192 WP_088612638.1 Mas-related G-protein coupled receptor member D -
  WV34_RS06840 (WV34_06710) - 1291602..1292366 (-) 765 WP_045506757.1 sulfite exporter TauE/SafE family protein -
  WV34_RS06845 (WV34_06715) - 1292510..1292977 (-) 468 WP_088612639.1 DinB family protein -
  WV34_RS06850 (WV34_06720) rapC 1293182..1294318 (+) 1137 WP_088030497.1 tetratricopeptide repeat protein Regulator
  WV34_RS06855 (WV34_06725) - 1294308..1294442 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  WV34_RS06860 (WV34_06730) - 1294586..1295545 (+) 960 WP_088612640.1 N-acetylmuramoyl-L-alanine amidase -
  WV34_RS06865 (WV34_06735) - 1295583..1295960 (-) 378 WP_013351931.1 PH domain-containing protein -
  WV34_RS06870 (WV34_06740) - 1296070..1296672 (+) 603 WP_088612641.1 poly-gamma-glutamate hydrolase family protein -
  WV34_RS06875 (WV34_06745) - 1296813..1297403 (-) 591 WP_013351933.1 ImmA/IrrE family metallo-endopeptidase -
  WV34_RS06880 (WV34_06750) xre 1297551..1297889 (-) 339 WP_013351934.1 HTH-type transcriptional regulator Xre -
  WV34_RS06885 (WV34_06755) - 1298080..1298259 (+) 180 WP_071346982.1 hypothetical protein -
  WV34_RS06890 (WV34_06760) - 1298249..1299076 (+) 828 WP_088612642.1 phage portal protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45044.33 Da        Isoelectric Point: 5.0536

>NTDB_id=126775 WV34_RS06850 WP_088030497.1 1293182..1294318(+) (rapC) [Bacillus amyloliquefaciens strain MT45]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=126775 WV34_RS06850 WP_088030497.1 1293182..1294318(+) (rapC) [Bacillus amyloliquefaciens strain MT45]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426

Multiple sequence alignment