Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   WV34_RS05570 Genome accession   NZ_CP011252
Coordinates   1064789..1067671 (+) Length   960 a.a.
NCBI ID   WP_088612518.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059789..1072671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS05545 (WV34_05455) - 1060225..1060992 (+) 768 WP_045507320.1 enoyl-CoA hydratase -
  WV34_RS05550 (WV34_05460) - 1061017..1061202 (-) 186 WP_071347147.1 YhzD family protein -
  WV34_RS05555 (WV34_05465) - 1061308..1062204 (+) 897 WP_013351698.1 ABC transporter ATP-binding protein -
  WV34_RS05560 (WV34_05470) - 1062197..1063456 (+) 1260 WP_088612516.1 ABC transporter permease -
  WV34_RS05565 (WV34_05475) - 1063569..1064792 (+) 1224 WP_088612517.1 DNA repair exonuclease -
  WV34_RS05570 (WV34_05480) sbcE 1064789..1067671 (+) 2883 WP_088612518.1 AAA family ATPase Machinery gene
  WV34_RS05575 (WV34_05485) yhaM 1067745..1068689 (+) 945 WP_045507300.1 3'-5' exoribonuclease YhaM -
  WV34_RS05580 (WV34_05490) - 1068805..1069032 (+) 228 WP_013351703.1 sporulation YhaL family protein -
  WV34_RS05585 (WV34_05495) - 1069072..1069929 (-) 858 WP_014469996.1 peptidylprolyl isomerase -
  WV34_RS05590 (WV34_05500) - 1070088..1070174 (+) 87 WP_016938346.1 YjcZ family sporulation protein -
  WV34_RS05595 (WV34_05505) yhzE2 1070298..1070384 (+) 87 WP_013351705.1 sporulation protein YhzE2 -
  WV34_RS05600 (WV34_05510) - 1070440..1070658 (-) 219 WP_003155245.1 hypothetical protein -
  WV34_RS05605 (WV34_05515) - 1070719..1071249 (-) 531 WP_088612519.1 DUF3267 domain-containing protein -
  WV34_RS05615 (WV34_05520) - 1071460..1071801 (+) 342 WP_003155243.1 YhaI family protein -
  WV34_RS05620 (WV34_05525) - 1071798..1072409 (-) 612 WP_014469997.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109877.81 Da        Isoelectric Point: 7.2065

>NTDB_id=126757 WV34_RS05570 WP_088612518.1 1064789..1067671(+) (sbcE) [Bacillus amyloliquefaciens strain MT45]
MKITALYIYQYGKFSNRSFQLSDAPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKTGGVYGGVVELNHDDYGAVK
IERTKGAAEKVRVYTASGEIKDGKWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLFSSLFGSEAAAKLDG
RLAKELERMYKPNGRNPRLNQELDTLKRLSAKLKQAETAEAGYHSLLEEKKSAGGRLQDAKAQLKDITEEIKTVKAAIEA
KPLADKKTALESELSSYPEAAEQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAEIKRQADLLSPNEDMLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWQLQEAVQSAGQARERKTQLDSLFEQAR
LELEDAERKHAVTAENVLEPAVRKEKEAALQAYKQTADSEGNEWQAHLRQLEKQRAKQKKLFLGAGILFIAIFVMLKEWL
PAALFTGALMLYVLTGMQKAVPSERSRPGHKKQKPLISKEEADLLQEELWRDGQQRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKKAEHFMRELGFSGSPSHLLDAYHVMKDVKKEILTKHELTIEAGRLQKLQRAFEERVKKLSPSDGRELS
VKERLHFLLQQAERAREDAKRKQALETDLLHAQEQIRELNEEVHYYEQQVKQLFTAAGAKNREHFCELGRLNESRRETER
QLREIKTHLSGKGGKQLEPYMSRTVPELEHTAVQKEQEKETLEEKIAHLREQIALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYQKLYFSEADDSIMVMQKDGTAFSASELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRERLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=126757 WV34_RS05570 WP_088612518.1 1064789..1067671(+) (sbcE) [Bacillus amyloliquefaciens strain MT45]
ATGAAAATAACGGCGCTCTATATTTACCAGTACGGAAAATTTTCCAATCGAAGCTTTCAGCTGTCGGATGCCCCCGTACA
AGTCATCTACGGATTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTCCTGTTCGGTTTCCCGAAAT
CAAAAAAATACGAACCGAAAACCGGCGGGGTTTACGGCGGCGTTGTGGAACTGAATCATGACGATTACGGTGCTGTCAAA
ATCGAACGGACAAAAGGGGCTGCCGAAAAAGTCAGAGTGTACACGGCTTCAGGCGAAATTAAGGACGGAAAATGGCTCAA
ACAGCTGCTTTCCGATACAGATCGTGCGCTGTACGAAGCGATCTATTCGTTTGATGTATTCGGACTGCAGGAGATTCAAG
CCTTTAACCGAGACAAAATCGGGGAGTTTCTCCTGTTTTCCAGCTTATTCGGGTCTGAAGCGGCGGCGAAGCTTGACGGC
AGACTGGCGAAAGAACTTGAAAGAATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAATTGGATACATTAAA
GCGGCTCAGCGCCAAGCTGAAACAGGCGGAAACTGCGGAAGCGGGCTATCACAGCCTCCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCAAAGCGCAATTGAAAGATATAACTGAAGAAATCAAAACAGTAAAAGCGGCGATAGAAGCA
AAGCCGCTTGCGGACAAAAAAACAGCGCTGGAAAGCGAACTTTCTTCTTACCCGGAAGCAGCGGAGCAATTCCCGAAGGA
CGGAATGCATCAGCTGGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGGCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAAATCAAACGGCAGGCTGATCTGCTCTCTCCAAATGAGGACATGTTACAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCACGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCAGCCCGTGT
TTCTTCAGGATTACAGCAGCTCGGCAGACATGAGGAAGACGGCATTCTTTCGCTGAACACCGATTATGAATATGAATGGC
AGCTGCAAGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAAACACAGCTTGACTCTCTATTTGAACAAGCGCGG
CTGGAGCTGGAAGACGCCGAACGAAAACATGCCGTGACGGCAGAAAACGTCTTGGAACCCGCTGTCAGAAAAGAAAAAGA
AGCCGCCTTACAAGCATATAAACAAACCGCTGATAGTGAAGGAAACGAATGGCAGGCTCATCTCCGGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGTTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCACTGATGCTGTACGTGCTGACTGGCATGCAAAAGGCGGTGCCGTCTGAAAGAAGCCG
GCCCGGTCACAAAAAGCAGAAGCCCCTGATCTCAAAAGAAGAGGCTGATCTTCTGCAGGAAGAGCTATGGCGTGACGGCC
AGCAGCGGCAGCAGCTGATTGCGGATCAAGCGGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCCGAAATGGCGCCCTCTGAAAAAAAGGCGGAACATTTTATGAGGGAACTGGGGTTTTCGGGCAGCCC
GTCCCATCTTCTCGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTACCAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAACTGCAAAGAGCATTTGAGGAACGGGTCAAAAAGCTGAGTCCTTCAGACGGCCGGGAGCTGTCC
GTAAAAGAAAGGCTGCACTTTTTGCTGCAGCAGGCGGAACGGGCCCGTGAAGACGCAAAACGAAAACAGGCGCTCGAAAC
AGACCTGCTGCATGCCCAAGAGCAAATCCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TTACAGCGGCAGGGGCAAAAAACCGTGAACACTTTTGTGAGCTCGGCAGGCTGAATGAAAGCCGCCGGGAAACAGAGAGG
CAGCTGCGCGAAATCAAAACGCACTTATCCGGCAAGGGCGGCAAACAGCTGGAGCCGTACATGAGCCGCACAGTGCCCGA
ACTTGAACATACAGCCGTTCAGAAAGAACAAGAGAAAGAAACACTTGAGGAAAAAATCGCCCATCTCCGTGAGCAGATCG
CTTTATTAACGGTGAAACAAGAACAGCTGGAGTCCTCGGGACTGGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAA
GAACGCGTTAAAAAAACAGCTAAAGAGTGGGCTGCATTGCAGACGGTCAGACACATCATCAGAGAAAAAATGGAGCGGCA
TAAAAAAGTCACGCTTCCCCGTCTGTTGGAAACCGCAGGTGCATTGTACGGACCGCTTACGGACGGACGCTATCAGAAAT
TGTATTTCTCTGAAGCTGATGACTCCATTATGGTCATGCAGAAAGACGGAACGGCTTTTTCTGCAAGCGAGCTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCGTCAGAACGGGAATCTGCGGTATCACTTCCGTTTTT
ACTTGATGACAGTTTTGTTCATTTTGACAGGGAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GCCGTCAGATTCTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCATTTCACAGCGGGCAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

58.014

100

0.584

Multiple sequence alignment