Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   WV34_RS04400 Genome accession   NZ_CP011252
Coordinates   848309..849025 (+) Length   238 a.a.
NCBI ID   WP_088612407.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 843309..854025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS04370 (WV34_04305) - 843488..843865 (+) 378 WP_065521592.1 DUF1992 domain-containing protein -
  WV34_RS04375 (WV34_04310) - 843875..844306 (-) 432 WP_088612404.1 Hsp20/alpha crystallin family protein -
  WV34_RS04380 (WV34_04315) - 844322..844564 (-) 243 WP_013351373.1 spore germination protein -
  WV34_RS04385 (WV34_04320) - 844579..844839 (-) 261 WP_007408496.1 spore germination protein -
  WV34_RS04390 (WV34_04325) treP 845108..846523 (+) 1416 WP_088612405.1 PTS system trehalose-specific EIIBC component -
  WV34_RS04395 (WV34_04330) treC 846600..848285 (+) 1686 WP_088612406.1 alpha,alpha-phosphotrehalase -
  WV34_RS04400 (WV34_04335) treR 848309..849025 (+) 717 WP_088612407.1 trehalose operon repressor Regulator
  WV34_RS04405 (WV34_04340) - 849159..849824 (+) 666 WP_045507769.1 NAD(P)H-dependent oxidoreductase -
  WV34_RS04410 (WV34_04345) - 849859..850623 (-) 765 WP_088612408.1 YibE/F family protein -
  WV34_RS04415 (WV34_04350) - 850620..851759 (-) 1140 WP_088612409.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27410.52 Da        Isoelectric Point: 7.3799

>NTDB_id=126750 WV34_RS04400 WP_088612407.1 848309..849025(+) (treR) [Bacillus amyloliquefaciens strain MT45]
MKVNKYITIYKDMVQQIESGMRKAEDVLPSENDLCDQYGASRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETKTTVHRLGLIPPPAEAAKELGAKADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEEELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=126750 WV34_RS04400 WP_088612407.1 848309..849025(+) (treR) [Bacillus amyloliquefaciens strain MT45]
ATGAAAGTGAATAAATACATCACAATCTATAAAGACATGGTGCAGCAAATCGAAAGCGGCATGCGGAAGGCGGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCGCATCAAGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTTAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAAAACGACGGTTCACCGTCTCGGGCTGATTCCGCC
TCCCGCCGAAGCCGCAAAAGAGCTTGGCGCAAAGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGGCGGATTGACG
GAGAACACATTATTTTGGACAAGGATTACTTTGTGAAAAAGCACGTTCCTCTTTTGACGAAGGCGATTTGCGAAGATTCG
ATTTACGAGTATCTCGAAGAAGAGCTCGGCCTGTCAATCAGCTACGCGCAAAAAGAAATTGTCGTGGAGCCGGCAGGGGA
AGAAGACCGAAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGTGTGTTTTTGGAGGATACCA
GCCTCTTTCAATATACGGAAAGCCGGCACAGGCTCGATAAATTTCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424

Multiple sequence alignment